Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | LLUC320_RS11465 | Genome accession | NZ_CP129095 |
| Coordinates | 2240548..2241048 (-) | Length | 166 a.a. |
| NCBI ID | WP_011677241.1 | Uniprot ID | A0A0M2ZSZ2 |
| Organism | Lactococcus cremoris strain UC320 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2240548..2264578 | 2240548..2241048 | within | 0 |
Gene organization within MGE regions
Location: 2240548..2264578
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LLUC320_RS11465 (LLUC320_11510) | ssb | 2240548..2241048 (-) | 501 | WP_011677241.1 | single-stranded DNA-binding protein | Machinery gene |
| LLUC320_RS11470 (LLUC320_11515) | rpsF | 2241078..2241371 (-) | 294 | WP_011677242.1 | 30S ribosomal protein S6 | - |
| LLUC320_RS11475 (LLUC320_11520) | - | 2241565..2242419 (-) | 855 | WP_021164831.1 | undecaprenyl-diphosphate phosphatase | - |
| LLUC320_RS11480 (LLUC320_11525) | - | 2242941..2244407 (+) | 1467 | WP_162494684.1 | amino acid permease | - |
| LLUC320_RS11485 (LLUC320_11530) | dnaX | 2244441..2246102 (-) | 1662 | WP_259764040.1 | DNA polymerase III subunit gamma/tau | - |
| LLUC320_RS11490 (LLUC320_11535) | - | 2246148..2246789 (-) | 642 | WP_011677246.1 | phosphotransferase | - |
| LLUC320_RS11495 (LLUC320_11540) | - | 2246821..2247309 (-) | 489 | WP_011677247.1 | GAF domain-containing protein | - |
| LLUC320_RS11500 (LLUC320_11545) | - | 2247393..2247665 (+) | 273 | WP_011677248.1 | chorismate mutase | - |
| LLUC320_RS11505 (LLUC320_11550) | - | 2247699..2248148 (-) | 450 | WP_011677249.1 | hypothetical protein | - |
| LLUC320_RS11510 (LLUC320_11555) | - | 2248438..2249622 (-) | 1185 | WP_259764036.1 | site-specific integrase | - |
| LLUC320_RS11515 (LLUC320_11560) | - | 2250142..2251434 (-) | 1293 | WP_396419171.1 | restriction endonuclease subunit S | - |
| LLUC320_RS11520 (LLUC320_11565) | - | 2251535..2251861 (-) | 327 | WP_021212069.1 | hypothetical protein | - |
| LLUC320_RS11525 (LLUC320_11570) | - | 2252427..2253323 (-) | 897 | WP_021213413.1 | Abi family protein | - |
| LLUC320_RS11530 (LLUC320_11575) | - | 2253619..2253813 (-) | 195 | WP_259763675.1 | hypothetical protein | - |
| LLUC320_RS11535 (LLUC320_11580) | - | 2253984..2254670 (-) | 687 | WP_021213658.1 | helix-turn-helix transcriptional regulator | - |
| LLUC320_RS11540 (LLUC320_11585) | - | 2254832..2255035 (+) | 204 | WP_021213657.1 | helix-turn-helix transcriptional regulator | - |
| LLUC320_RS11545 (LLUC320_11590) | - | 2255054..2255743 (+) | 690 | WP_259763674.1 | Rha family transcriptional regulator | - |
| LLUC320_RS11550 (LLUC320_11595) | - | 2256008..2256184 (+) | 177 | WP_098404898.1 | CopG family transcriptional regulator | - |
| LLUC320_RS11555 (LLUC320_11600) | - | 2256397..2256618 (+) | 222 | WP_259763673.1 | hypothetical protein | - |
| LLUC320_RS11560 (LLUC320_11605) | - | 2256808..2257338 (+) | 531 | WP_259763672.1 | hypothetical protein | - |
| LLUC320_RS11565 (LLUC320_11610) | - | 2257335..2257553 (+) | 219 | WP_259763671.1 | hypothetical protein | - |
| LLUC320_RS11570 (LLUC320_11615) | - | 2257550..2257831 (+) | 282 | WP_259763670.1 | hypothetical protein | - |
| LLUC320_RS11575 (LLUC320_11620) | - | 2257872..2258111 (+) | 240 | WP_021212081.1 | hypothetical protein | - |
| LLUC320_RS11580 (LLUC320_11625) | - | 2258359..2258553 (+) | 195 | WP_021212083.1 | hypothetical protein | - |
| LLUC320_RS11585 (LLUC320_11630) | - | 2258540..2258875 (+) | 336 | WP_259763669.1 | hypothetical protein | - |
| LLUC320_RS11590 (LLUC320_11635) | - | 2258872..2259666 (+) | 795 | WP_259763668.1 | bifunctional DNA primase/polymerase | - |
| LLUC320_RS11595 (LLUC320_11640) | - | 2259677..2261305 (+) | 1629 | WP_259763667.1 | phage/plasmid primase, P4 family | - |
| LLUC320_RS11600 (LLUC320_11645) | - | 2261531..2262073 (+) | 543 | WP_259763666.1 | hypothetical protein | - |
| LLUC320_RS11605 (LLUC320_11650) | - | 2262115..2262435 (+) | 321 | WP_259763665.1 | hypothetical protein | - |
| LLUC320_RS11610 (LLUC320_11655) | - | 2262559..2262825 (+) | 267 | WP_151318461.1 | hypothetical protein | - |
| LLUC320_RS11615 (LLUC320_11660) | - | 2263198..2263950 (+) | 753 | WP_259763664.1 | hypothetical protein | - |
| LLUC320_RS11620 (LLUC320_11665) | - | 2264378..2264578 (+) | 201 | WP_021164829.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 166 a.a. Molecular weight: 18233.05 Da Isoelectric Point: 5.2166
>NTDB_id=850856 LLUC320_RS11465 WP_011677241.1 2240548..2241048(-) (ssb) [Lactococcus cremoris strain UC320]
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSARDGMGGGASAGSYSAPSQSTNNTPRPQTNNNSATPNFGRDADPFGSSPMEIS
DDDLPF
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSARDGMGGGASAGSYSAPSQSTNNTPRPQTNNNSATPNFGRDADPFGSSPMEIS
DDDLPF
Nucleotide
Download Length: 501 bp
>NTDB_id=850856 LLUC320_RS11465 WP_011677241.1 2240548..2241048(-) (ssb) [Lactococcus cremoris strain UC320]
ATGATTAACAATGTTGTATTAGTGGGACGCATTACTCGCGATCCTGAACTTCGTTACACCCCTCAAAATCAAGCTGTTGC
TACTTTTTCATTGGCTGTAAATCGTCAATTTAAAAATGCTAACGGTGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGCCAACAAGCTGAAAATTTGGCAAATTGGGCTAAAAAAGGAGCTTTGATCGGTGTAACTGGTCGAATTCAAACACGT
AATTATGAAAATCAACAAGGTCAACGCGTTTATGTGACTGAGGTTGTGGCTGATAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGCGATGGTATGGGAGGCGGAGCTTCTGCCGGTTCATATTCTGCACCAAGCCAATCTACAAATAATACTCCACGTC
CACAAACGAATAATAATAGTGCAACACCGAATTTCGGTCGTGATGCTGACCCATTTGGTAGCTCACCTATGGAAATCTCG
GATGATGACCTTCCATTCTAA
ATGATTAACAATGTTGTATTAGTGGGACGCATTACTCGCGATCCTGAACTTCGTTACACCCCTCAAAATCAAGCTGTTGC
TACTTTTTCATTGGCTGTAAATCGTCAATTTAAAAATGCTAACGGTGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGCCAACAAGCTGAAAATTTGGCAAATTGGGCTAAAAAAGGAGCTTTGATCGGTGTAACTGGTCGAATTCAAACACGT
AATTATGAAAATCAACAAGGTCAACGCGTTTATGTGACTGAGGTTGTGGCTGATAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGCGATGGTATGGGAGGCGGAGCTTCTGCCGGTTCATATTCTGCACCAAGCCAATCTACAAATAATACTCCACGTC
CACAAACGAATAATAATAGTGCAACACCGAATTTCGGTCGTGATGCTGACCCATTTGGTAGCTCACCTATGGAAATCTCG
GATGATGACCTTCCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
59.884 |
100 |
0.62 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
56.395 |
100 |
0.584 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.855 |
0.373 |
| ssb | Glaesserella parasuis strain SC1401 |
33.898 |
100 |
0.361 |