Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   LLUC310_RS09265 Genome accession   NZ_CP129094
Coordinates   1703266..1704537 (-) Length   423 a.a.
NCBI ID   WP_345894098.1    Uniprot ID   -
Organism   Lactococcus cremoris strain UC310     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1698266..1709537
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLUC310_RS09230 (LLUC310_09300) atpF 1698728..1699234 (-) 507 WP_010906128.1 F0F1 ATP synthase subunit B -
  LLUC310_RS09235 (LLUC310_09305) atpB 1699249..1699962 (-) 714 WP_004255255.1 F0F1 ATP synthase subunit A -
  LLUC310_RS09240 (LLUC310_09310) - 1700009..1700224 (-) 216 WP_014572212.1 F0F1 ATP synthase subunit C -
  LLUC310_RS09245 (LLUC310_09315) - 1700407..1701183 (-) 777 WP_014572211.1 alpha/beta hydrolase family protein -
  LLUC310_RS09250 (LLUC310_09320) - 1701467..1701772 (-) 306 Protein_1656 ComEC/Rec2 family competence protein -
  LLUC310_RS09255 (LLUC310_09325) - 1701793..1702683 (-) 891 WP_347450349.1 IS982-like element ISLll1 family transposase -
  LLUC310_RS09260 (LLUC310_09330) comEC 1702760..1703269 (-) 510 WP_021165649.1 MBL fold metallo-hydrolase Machinery gene
  LLUC310_RS09265 (LLUC310_09335) comEC 1703266..1704537 (-) 1272 WP_345894098.1 ComEC/Rec2 family competence protein Machinery gene
  LLUC310_RS09270 (LLUC310_09340) comEA 1704665..1705111 (-) 447 WP_228763864.1 helix-hairpin-helix domain-containing protein Machinery gene
  LLUC310_RS09275 (LLUC310_09345) - 1705377..1706738 (-) 1362 WP_014572203.1 ABC transporter permease -
  LLUC310_RS09280 (LLUC310_09350) - 1706735..1707667 (-) 933 WP_014572202.1 ABC transporter ATP-binding protein -
  LLUC310_RS09285 (LLUC310_09355) - 1707773..1708171 (-) 399 WP_011676775.1 hypothetical protein -
  LLUC310_RS09290 (LLUC310_09360) - 1708263..1708847 (-) 585 WP_134047437.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 48984.12 Da        Isoelectric Point: 9.7194

>NTDB_id=850788 LLUC310_RS09265 WP_345894098.1 1703266..1704537(-) (comEC) [Lactococcus cremoris strain UC310]
MIPILIVFAVFFLLINSLSIRDNENQPKNLSKIELIPDTIQVNGDLLSFQGRMNGQKYQVYDTLKSLKEKGFYQNLSQNC
QLSFTGNLEIPETQRNFNGFDDQKYLTSQNIYRQITIQQITNVEIKKNFDLHTLRRKAIVWTQNHFPKPMSDYMTGLLFG
FLSKDFNQMSDIYSSLGIIHLFALSGMQVNFFIDWFRKILLRMGLTRERVNLVQIPFSIFYAFMTGLSVSVLRALFQKNI
RLTSLDNIAVTTLVLMLISPKFLLTTGGQLTLFYAFVISMLNHPFSNLNGLKKVLTESSVLSLCVLPLLIFDFHIFQPLS
ILLTIIFGFLFDFMLLPLLLCCFLISFLGFSLNLNYIFQILEWLVYKVDLPLHYPLVLGKPSSLELIILFVLIGLFVDSF
SHKKRRFFLIGFIFLFFSSLKIQ

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=850788 LLUC310_RS09265 WP_345894098.1 1703266..1704537(-) (comEC) [Lactococcus cremoris strain UC310]
ATGATTCCGATATTAATTGTTTTTGCTGTATTTTTTCTGTTAATCAATAGTCTTAGTATTAGGGATAATGAAAATCAACC
AAAAAATCTCTCAAAAATTGAATTAATTCCAGATACAATCCAAGTCAATGGTGATTTATTGAGTTTTCAGGGGAGAATGA
ATGGACAAAAATATCAAGTCTATGACACATTGAAAAGTCTAAAAGAGAAAGGGTTTTATCAGAACTTAAGTCAAAATTGT
CAGTTAAGTTTCACAGGAAACCTTGAAATACCAGAAACTCAGCGAAATTTTAATGGTTTTGATGACCAAAAATATTTAAC
TAGTCAAAATATCTATCGACAGATTACCATCCAACAAATTACAAATGTGGAAATAAAAAAGAATTTTGACCTTCATACTT
TAAGGCGAAAGGCAATTGTTTGGACACAAAATCATTTTCCAAAACCGATGAGTGACTATATGACAGGTTTGCTTTTTGGC
TTTTTAAGTAAGGATTTTAATCAGATGAGCGATATTTACAGCTCTTTAGGAATTATTCATCTTTTTGCTCTATCAGGAAT
GCAAGTAAATTTTTTTATTGATTGGTTTCGTAAAATACTTCTTCGCATGGGACTGACGAGAGAAAGAGTGAATCTTGTTC
AAATTCCATTTTCTATTTTTTATGCTTTTATGACGGGATTATCGGTTTCAGTTTTAAGAGCCCTTTTTCAAAAAAATATT
CGTCTGACTTCTTTGGATAATATCGCAGTTACGACATTAGTTTTGATGCTCATAAGTCCAAAATTTTTACTGACGACTGG
TGGTCAGCTTACCTTGTTTTATGCTTTTGTCATTTCGATGCTTAATCATCCTTTTTCTAATTTAAATGGATTGAAAAAAG
TGCTGACAGAATCATCAGTCCTTTCACTTTGTGTTCTTCCGTTACTCATCTTTGATTTCCATATTTTTCAGCCTCTTTCA
ATATTATTAACAATTATATTTGGTTTTCTTTTTGATTTTATGTTGCTCCCGCTGCTTTTATGCTGTTTTCTTATATCATT
TTTGGGATTTTCGCTCAATTTAAATTATATTTTTCAAATTCTAGAATGGCTAGTTTATAAAGTTGATTTACCCTTACATT
ACCCCCTTGTTTTGGGGAAACCTAGTTCACTCGAATTAATTATTCTATTTGTGTTAATTGGTTTATTCGTAGATTCATTT
TCTCATAAAAAAAGGAGATTTTTTTTAATTGGATTTATATTTTTATTTTTTTCATCACTAAAAATCCAATGA

Domains

Predicted by InterProScan.

Competence protein (Competence)

(157-397)

Domain of unknown function (DUF4131) (DUF4131)

(56-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Lactococcus lactis subsp. cremoris KW2

96.882

98.582

0.955
  comEC/celB Streptococcus mitis SK321

46.77

91.489

0.428
  comEC/celB Streptococcus pneumoniae TIGR4

46.253

91.489

0.423
  comEC/celB Streptococcus mitis NCTC 12261

46.253

91.489

0.423
  comEC/celB Streptococcus pneumoniae Rx1

45.478

91.489

0.416
  comEC/celB Streptococcus pneumoniae D39

45.478

91.489

0.416
  comEC/celB Streptococcus pneumoniae R6

45.478

91.489

0.416