Detailed information NTG0850788

Bioinformatically predicted

Overview

• Name: comEC
• Type: Machinery gene
• Locus tag: LLUC310_RS09265
• Genome accession: NZ_CP129094
• Coordinates: 1703266..1704537 (-)
• Length: 423 a.a.
• NCBI ID: WP_345894098.1
• Uniprot ID: -
• Organism: Lactococcus cremoris strain UC310
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	1701793..1702683	1703266..1704537	flank	583

Gene organization within MGE regions

Location: 1701793..1704537

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LLUC310_RS09255 (LLUC310_09325)	-	1701793..1702683 (-)	891	WP_347450349.1	IS982-like element ISLll1 family transposase	-
LLUC310_RS09260 (LLUC310_09330)	comEC	1702760..1703269 (-)	510	WP_021165649.1	MBL fold metallo-hydrolase	Machinery gene
LLUC310_RS09265 (LLUC310_09335)	comEC	1703266..1704537 (-)	1272	WP_345894098.1	ComEC/Rec2 family competence protein	Machinery gene

Sequence

Protein

• Length: 423 a.a.
• Molecular weight: 48984.12 Da
• Isoelectric Point: 9.7194

>NTDB_id=850788 LLUC310_RS09265 WP_345894098.1 1703266..1704537(-) (comEC) [Lactococcus cremoris strain UC310]
MIPILIVFAVFFLLINSLSIRDNENQPKNLSKIELIPDTIQVNGDLLSFQGRMNGQKYQVYDTLKSLKEKGFYQNLSQNC
QLSFTGNLEIPETQRNFNGFDDQKYLTSQNIYRQITIQQITNVEIKKNFDLHTLRRKAIVWTQNHFPKPMSDYMTGLLFG
FLSKDFNQMSDIYSSLGIIHLFALSGMQVNFFIDWFRKILLRMGLTRERVNLVQIPFSIFYAFMTGLSVSVLRALFQKNI
RLTSLDNIAVTTLVLMLISPKFLLTTGGQLTLFYAFVISMLNHPFSNLNGLKKVLTESSVLSLCVLPLLIFDFHIFQPLS
ILLTIIFGFLFDFMLLPLLLCCFLISFLGFSLNLNYIFQILEWLVYKVDLPLHYPLVLGKPSSLELIILFVLIGLFVDSF
SHKKRRFFLIGFIFLFFSSLKIQ

Nucleotide

• Length: 1272 bp

>NTDB_id=850788 LLUC310_RS09265 WP_345894098.1 1703266..1704537(-) (comEC) [Lactococcus cremoris strain UC310]
ATGATTCCGATATTAATTGTTTTTGCTGTATTTTTTCTGTTAATCAATAGTCTTAGTATTAGGGATAATGAAAATCAACC
AAAAAATCTCTCAAAAATTGAATTAATTCCAGATACAATCCAAGTCAATGGTGATTTATTGAGTTTTCAGGGGAGAATGA
ATGGACAAAAATATCAAGTCTATGACACATTGAAAAGTCTAAAAGAGAAAGGGTTTTATCAGAACTTAAGTCAAAATTGT
CAGTTAAGTTTCACAGGAAACCTTGAAATACCAGAAACTCAGCGAAATTTTAATGGTTTTGATGACCAAAAATATTTAAC
TAGTCAAAATATCTATCGACAGATTACCATCCAACAAATTACAAATGTGGAAATAAAAAAGAATTTTGACCTTCATACTT
TAAGGCGAAAGGCAATTGTTTGGACACAAAATCATTTTCCAAAACCGATGAGTGACTATATGACAGGTTTGCTTTTTGGC
TTTTTAAGTAAGGATTTTAATCAGATGAGCGATATTTACAGCTCTTTAGGAATTATTCATCTTTTTGCTCTATCAGGAAT
GCAAGTAAATTTTTTTATTGATTGGTTTCGTAAAATACTTCTTCGCATGGGACTGACGAGAGAAAGAGTGAATCTTGTTC
AAATTCCATTTTCTATTTTTTATGCTTTTATGACGGGATTATCGGTTTCAGTTTTAAGAGCCCTTTTTCAAAAAAATATT
CGTCTGACTTCTTTGGATAATATCGCAGTTACGACATTAGTTTTGATGCTCATAAGTCCAAAATTTTTACTGACGACTGG
TGGTCAGCTTACCTTGTTTTATGCTTTTGTCATTTCGATGCTTAATCATCCTTTTTCTAATTTAAATGGATTGAAAAAAG
TGCTGACAGAATCATCAGTCCTTTCACTTTGTGTTCTTCCGTTACTCATCTTTGATTTCCATATTTTTCAGCCTCTTTCA
ATATTATTAACAATTATATTTGGTTTTCTTTTTGATTTTATGTTGCTCCCGCTGCTTTTATGCTGTTTTCTTATATCATT
TTTGGGATTTTCGCTCAATTTAAATTATATTTTTCAAATTCTAGAATGGCTAGTTTATAAAGTTGATTTACCCTTACATT
ACCCCCTTGTTTTGGGGAAACCTAGTTCACTCGAATTAATTATTCTATTTGTGTTAATTGGTTTATTCGTAGATTCATTT
TCTCATAAAAAAAGGAGATTTTTTTTAATTGGATTTATATTTTTATTTTTTTCATCACTAAAAATCCAATGA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (157-397)

• Domain of unknown function (DUF4131) (DUF4131) (56-122)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comEC	Lactococcus lactis subsp. cremoris KW2	96.882	98.582	0.955
comEC/celB	Streptococcus mitis SK321	46.77	91.489	0.428
comEC/celB	Streptococcus pneumoniae TIGR4	46.253	91.489	0.423
comEC/celB	Streptococcus mitis NCTC 12261	46.253	91.489	0.423
comEC/celB	Streptococcus pneumoniae Rx1	45.478	91.489	0.416
comEC/celB	Streptococcus pneumoniae D39	45.478	91.489	0.416
comEC/celB	Streptococcus pneumoniae R6	45.478	91.489	0.416