Detailed information    

insolico Bioinformatically predicted

Overview

Name   comW   Type   Regulator
Locus tag   LBA42_RS06820 Genome accession   NZ_CP145437
Coordinates   1354557..1354793 (-) Length   78 a.a.
NCBI ID   WP_000939545.1    Uniprot ID   A0A0H2ZMA7
Organism   Streptococcus pneumoniae strain HAC 39-1996     
Function   stabilization and activation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1349557..1359793
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LBA42_RS06790 (LBA42_06790) radA 1349850..1351211 (-) 1362 WP_078139281.1 DNA repair protein RadA Machinery gene
  LBA42_RS06795 (LBA42_06795) - 1351225..1351740 (-) 516 WP_000691236.1 histidine phosphatase family protein -
  LBA42_RS06800 (LBA42_06800) - 1351742..1352185 (-) 444 WP_000701992.1 dUTP diphosphatase -
  LBA42_RS06810 (LBA42_06810) tadA 1352372..1352839 (-) 468 WP_000291870.1 tRNA adenosine(34) deaminase TadA -
  LBA42_RS06815 (LBA42_06815) - 1353040..1354326 (-) 1287 WP_000205044.1 adenylosuccinate synthase -
  LBA42_RS06820 (LBA42_06820) comW 1354557..1354793 (-) 237 WP_000939545.1 sigma(X)-activator ComW Regulator
  LBA42_RS06825 (LBA42_06825) - 1355059..1355920 (+) 862 Protein_1355 transposase -
  LBA42_RS06830 (LBA42_06830) - 1355955..1356164 (-) 210 Protein_1356 transposase -

Sequence

Protein


Download         Length: 78 a.a.        Molecular weight: 9658.13 Da        Isoelectric Point: 6.7051

>NTDB_id=850746 LBA42_RS06820 WP_000939545.1 1354557..1354793(-) (comW) [Streptococcus pneumoniae strain HAC 39-1996]
MLQKIYEQMANFYDSIEEEYGPTFGDNFDWEHVHFKFLIYYLVRYGIGCRKDFIVYHYRVAYRLYLEKLVMNRGFISC

Nucleotide


Download         Length: 237 bp        

>NTDB_id=850746 LBA42_RS06820 WP_000939545.1 1354557..1354793(-) (comW) [Streptococcus pneumoniae strain HAC 39-1996]
ATGTTACAAAAAATTTATGAGCAGATGGCTAATTTCTATGATAGTATTGAAGAAGAGTATGGTCCTACATTTGGTGATAA
TTTTGACTGGGAACATGTTCATTTTAAATTTTTAATTTATTATTTAGTGAGATATGGCATTGGTTGTCGTAAGGATTTTA
TTGTTTACCATTATCGTGTTGCTTATCGTTTGTATCTTGAAAAATTGGTAATGAATCGGGGTTTTATTTCTTGTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZMA7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comW Streptococcus pneumoniae Rx1

100

100

1
  comW Streptococcus pneumoniae D39

100

100

1
  comW Streptococcus pneumoniae R6

100

100

1
  comW Streptococcus pneumoniae TIGR4

100

100

1
  comW Streptococcus mitis SK321

75.641

100

0.756
  comW Streptococcus mitis NCTC 12261

75.325

98.718

0.744