Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   LC065_RS04965 Genome accession   NZ_CP129016
Coordinates   932181..932675 (+) Length   164 a.a.
NCBI ID   WP_226593440.1    Uniprot ID   -
Organism   Halobacillus litoralis strain SaN21-8     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 927181..937675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LC065_RS04935 (LC065_04935) yyaC 927350..927976 (-) 627 WP_226593448.1 spore protease YyaC -
  LC065_RS04940 (LC065_04940) - 928066..929085 (+) 1020 WP_226593446.1 hypothetical protein -
  LC065_RS04945 (LC065_04945) - 929138..930085 (+) 948 WP_226593444.1 mechanosensitive ion channel family protein -
  LC065_RS04950 (LC065_04950) - 930085..930279 (+) 195 WP_089650710.1 DUF951 domain-containing protein -
  LC065_RS04955 (LC065_04955) ychF 930638..931735 (+) 1098 WP_226593442.1 redox-regulated ATPase YchF -
  LC065_RS04960 (LC065_04960) rpsF 931875..932168 (+) 294 WP_226582281.1 30S ribosomal protein S6 -
  LC065_RS04965 (LC065_04965) ssbA 932181..932675 (+) 495 WP_226593440.1 single-stranded DNA-binding protein Machinery gene
  LC065_RS04970 (LC065_04970) rpsR 932697..932924 (+) 228 WP_115822996.1 30S ribosomal protein S18 -
  LC065_RS04975 (LC065_04975) - 933523..933960 (-) 438 WP_226593437.1 Rrf2 family transcriptional regulator -
  LC065_RS04980 (LC065_04980) hmpA 934143..935363 (+) 1221 WP_226593435.1 NO-inducible flavohemoprotein -
  LC065_RS04985 (LC065_04985) - 935440..936069 (-) 630 WP_226593433.1 YitT family protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 17832.32 Da        Isoelectric Point: 4.5704

>NTDB_id=850543 LC065_RS04965 WP_226593440.1 932181..932675(+) (ssbA) [Halobacillus litoralis strain SaN21-8]
MLNRVVLAGRLTKDPDLRYTPNGVAVANFTIAVNRPFSNNSGDRDADFINCVVWRRAAENLANFMSKGSLVGVDGRLQSR
SFDNQEGKRVFVTEVVADSVQFLESKGASQGGGNRGGSGYQSNQNQQPSGNNFGSNNNNNQQRNDDPFADNGEPIDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=850543 LC065_RS04965 WP_226593440.1 932181..932675(+) (ssbA) [Halobacillus litoralis strain SaN21-8]
ATGTTAAATCGTGTCGTATTAGCCGGCAGATTGACGAAGGATCCTGATTTACGCTATACGCCAAACGGAGTAGCTGTTGC
CAACTTTACAATTGCTGTTAACCGTCCTTTTTCAAATAACTCAGGAGATCGCGATGCCGATTTCATTAACTGTGTGGTTT
GGAGACGTGCGGCTGAGAACTTAGCTAACTTTATGAGTAAAGGAAGCTTAGTTGGAGTTGATGGACGTTTACAGTCCCGC
AGCTTCGATAACCAAGAAGGTAAGCGTGTATTTGTAACAGAAGTTGTTGCAGATAGCGTGCAGTTCCTAGAGTCCAAAGG
TGCTTCCCAAGGTGGGGGTAACCGTGGAGGTTCAGGATACCAATCAAATCAGAATCAACAACCATCAGGAAACAACTTCG
GTTCTAATAACAACAATAACCAACAACGAAATGACGACCCATTCGCAGATAATGGGGAGCCAATCGATATATCAGATGAT
GATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

63.953

100

0.671
  ssb Latilactobacillus sakei subsp. sakei 23K

55.429

100

0.591
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

64.634

0.39
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.372