Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   LC087_RS13645 Genome accession   NZ_CP129013
Coordinates   2667749..2668261 (-) Length   170 a.a.
NCBI ID   WP_226541354.1    Uniprot ID   -
Organism   Bacillus carboniphilus strain SaN35-3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2662749..2673261
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LC087_RS13625 (LC087_13625) dnaB 2663141..2664505 (-) 1365 WP_226541358.1 replicative DNA helicase -
  LC087_RS13630 (LC087_13630) rplI 2664643..2665089 (-) 447 WP_226541357.1 50S ribosomal protein L9 -
  LC087_RS13635 (LC087_13635) - 2665086..2667103 (-) 2018 Protein_2694 DHH family phosphoesterase -
  LC087_RS13640 (LC087_13640) rpsR 2667488..2667727 (-) 240 WP_226541355.1 30S ribosomal protein S18 -
  LC087_RS13645 (LC087_13645) ssbA 2667749..2668261 (-) 513 WP_226541354.1 single-stranded DNA-binding protein Machinery gene
  LC087_RS13650 (LC087_13650) rpsF 2668354..2668641 (-) 288 WP_226541352.1 30S ribosomal protein S6 -
  LC087_RS13655 (LC087_13655) ychF 2668781..2669881 (-) 1101 WP_226541350.1 redox-regulated ATPase YchF -
  LC087_RS13660 (LC087_13660) - 2670206..2671453 (-) 1248 WP_371932702.1 MFS transporter -
  LC087_RS13665 (LC087_13665) - 2671887..2672084 (-) 198 WP_226541346.1 DUF951 domain-containing protein -
  LC087_RS13670 (LC087_13670) - 2672077..2672982 (-) 906 WP_226541344.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18928.60 Da        Isoelectric Point: 4.8013

>NTDB_id=850531 LC087_RS13645 WP_226541354.1 2667749..2668261(-) (ssbA) [Bacillus carboniphilus strain SaN35-3]
MLNRVVLVGRLTKDPELRYTPNGVAVATFTLAVNRTFTNQQGEREADFINCVVWRRQAENVANFLNKGSLAGVDGRLQSR
SYEDQSGRRVFVTEVVGDSVQFLEPKNSNNAGNNNNRNNYGRQDENPFGGGGSDFNSQPSQNQNKRTNLNEDPFANDGKP
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=850531 LC087_RS13645 WP_226541354.1 2667749..2668261(-) (ssbA) [Bacillus carboniphilus strain SaN35-3]
ATGTTAAACCGAGTTGTGCTTGTCGGTAGGCTCACAAAAGATCCTGAGCTACGTTATACACCAAATGGTGTAGCGGTTGC
TACATTTACTTTAGCTGTTAACCGTACGTTTACGAATCAGCAAGGTGAACGAGAGGCAGACTTCATTAATTGTGTCGTTT
GGCGAAGACAAGCTGAAAATGTTGCGAACTTCTTAAACAAGGGGAGCCTTGCAGGAGTGGACGGACGCCTTCAGTCTCGT
AGTTATGAAGACCAATCAGGTAGAAGAGTGTTTGTAACTGAGGTTGTCGGAGATAGCGTTCAATTCCTCGAACCGAAAAA
TTCGAATAATGCAGGGAACAACAATAACCGTAACAATTATGGTCGCCAGGATGAAAATCCATTTGGTGGTGGTGGATCAG
ACTTTAACAGTCAACCTAGTCAAAACCAAAATAAGCGGACAAACCTAAATGAAGATCCATTTGCGAACGATGGAAAACCA
ATTGATATATCCGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

71.91

100

0.753
  ssb Latilactobacillus sakei subsp. sakei 23K

56.647

100

0.576
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.407

66.471

0.388
  ssb Glaesserella parasuis strain SC1401

35.556

100

0.376