Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   QU579_RS09430 Genome accession   NZ_CP128803
Coordinates   2060785..2061372 (-) Length   195 a.a.
NCBI ID   WP_029856865.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain NJIFDCVp52     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2055785..2066372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QU579_RS09410 (QU579_09650) - 2055982..2057247 (-) 1266 WP_342821088.1 DUF945 family protein -
  QU579_RS09415 (QU579_09655) - 2057434..2059374 (+) 1941 WP_029856869.1 ATP-binding protein -
  QU579_RS09420 (QU579_09660) - 2059371..2059868 (+) 498 WP_029856867.1 response regulator -
  QU579_RS09425 (QU579_09665) - 2060066..2060611 (+) 546 WP_029856866.1 hypothetical protein -
  QU579_RS09430 (QU579_09670) tfoX 2060785..2061372 (-) 588 WP_029856865.1 TfoX/Sxy family DNA transformation protein Regulator
  QU579_RS09435 (QU579_09675) - 2061743..2062663 (+) 921 WP_017448658.1 HDOD domain-containing protein -
  QU579_RS09440 (QU579_09680) - 2062771..2063676 (+) 906 WP_005483516.1 lysine exporter LysO family protein -
  QU579_RS09445 (QU579_09685) - 2063884..2064396 (+) 513 WP_258470354.1 hypothetical protein -
  QU579_RS09450 (QU579_09690) panP 2064557..2066203 (+) 1647 WP_025818187.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22455.82 Da        Isoelectric Point: 7.0628

>NTDB_id=849651 QU579_RS09430 WP_029856865.1 2060785..2061372(-) (tfoX) [Vibrio parahaemolyticus strain NJIFDCVp52]
MDMTDQAFFKYVRNFNEYQKRSMFGGIGLFSDDAMFALVSNDCCYLRGGNGLDEEFTLLNCEKYKHVKKQTTATVNYYDV
TDLFESGFPGLDDLLRKSIDCSIKERKYQKSSASKRLRDLPNMQLTLERMVKKAGIDDVETFLELGPVEVFNKVRVAYGN
DVDVKLLWKFAGAIDGVHWKLIQEPRKKQLLALCE

Nucleotide


Download         Length: 588 bp        

>NTDB_id=849651 QU579_RS09430 WP_029856865.1 2060785..2061372(-) (tfoX) [Vibrio parahaemolyticus strain NJIFDCVp52]
ATGGACATGACAGACCAAGCTTTTTTTAAATATGTACGCAATTTTAATGAGTATCAGAAACGTTCTATGTTTGGTGGTAT
CGGCTTGTTTAGCGATGACGCCATGTTTGCGCTTGTCAGCAATGATTGCTGTTATTTGCGCGGCGGTAATGGTTTAGACG
AAGAATTTACTCTGCTTAATTGTGAAAAATACAAGCACGTCAAAAAACAGACGACGGCTACTGTAAACTATTATGACGTA
ACCGATTTATTTGAGTCCGGATTTCCTGGTCTTGACGATTTGTTACGCAAATCTATTGATTGCTCAATTAAGGAGCGAAA
ATACCAAAAGTCTTCTGCAAGTAAACGTTTGAGAGATCTACCGAACATGCAGCTTACATTAGAGCGCATGGTTAAAAAGG
CGGGTATTGATGATGTTGAAACCTTTTTGGAACTTGGTCCAGTTGAAGTGTTCAACAAAGTAAGAGTTGCTTACGGCAAT
GATGTTGACGTTAAACTGCTGTGGAAGTTTGCTGGTGCCATTGATGGTGTGCACTGGAAACTAATCCAAGAGCCGCGCAA
AAAACAGTTACTGGCACTGTGTGAATAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(114-192)

TfoX N-terminal domain (TfoX_N)

(11-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio parahaemolyticus RIMD 2210633

99.487

100

0.995
  tfoX Vibrio campbellii strain DS40M4

91.795

100

0.918
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

68.912

98.974

0.682
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

68.912

98.974

0.682
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

68.912

98.974

0.682
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

68.912

98.974

0.682
  tfoX Vibrio cholerae strain A1552

68.912

98.974

0.682
  tfoX Aliivibrio fischeri ES114

57.068

97.949

0.559