Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | QU579_RS01700 | Genome accession | NZ_CP128803 |
| Coordinates | 359014..359607 (+) | Length | 197 a.a. |
| NCBI ID | WP_005496571.1 | Uniprot ID | A0A0F2HLP7 |
| Organism | Vibrio parahaemolyticus strain NJIFDCVp52 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 354014..364607
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QU579_RS01685 (QU579_01690) | - | 354730..357300 (-) | 2571 | WP_005496567.1 | penicillin-binding protein 1A | - |
| QU579_RS01690 (QU579_01695) | pilM | 357443..358459 (+) | 1017 | WP_100662586.1 | type IV pilus biogenesis protein PilM | Machinery gene |
| QU579_RS01695 (QU579_01700) | pilN | 358443..359021 (+) | 579 | WP_015297396.1 | PilN domain-containing protein | Machinery gene |
| QU579_RS01700 (QU579_01705) | pilO | 359014..359607 (+) | 594 | WP_005496571.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| QU579_RS01705 (QU579_01710) | pilP | 359597..360112 (+) | 516 | WP_025532853.1 | pilus assembly protein PilP | Machinery gene |
| QU579_RS01710 (QU579_01715) | pilQ | 360144..361892 (+) | 1749 | WP_005488227.1 | type IV pilus secretin PilQ | Machinery gene |
| QU579_RS01715 (QU579_01720) | aroK | 362081..362599 (+) | 519 | WP_005381319.1 | shikimate kinase AroK | - |
| QU579_RS01720 (QU579_01725) | aroB | 362631..363731 (+) | 1101 | WP_023622897.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 197 a.a. Molecular weight: 23019.57 Da Isoelectric Point: 4.9419
>NTDB_id=849630 QU579_RS01700 WP_005496571.1 359014..359607(+) (pilO) [Vibrio parahaemolyticus strain NJIFDCVp52]
MVNWQDLEMDEIAEWPLLPQLVVICLLVLLIQGFGYWFYLKPEEARLNNLIQEEQTLKVALRIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGEKQSENFLYRLPLNIELTGDFHDIGRFSQAIATLPRII
TFKDVTWQRVSQESETLHFRVRANTYQFKPEEKKDGK
MVNWQDLEMDEIAEWPLLPQLVVICLLVLLIQGFGYWFYLKPEEARLNNLIQEEQTLKVALRIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGEKQSENFLYRLPLNIELTGDFHDIGRFSQAIATLPRII
TFKDVTWQRVSQESETLHFRVRANTYQFKPEEKKDGK
Nucleotide
Download Length: 594 bp
>NTDB_id=849630 QU579_RS01700 WP_005496571.1 359014..359607(+) (pilO) [Vibrio parahaemolyticus strain NJIFDCVp52]
ATGGTTAATTGGCAAGATCTAGAAATGGATGAGATTGCTGAATGGCCATTACTGCCTCAGCTTGTAGTGATCTGCCTGCT
TGTTCTTCTTATCCAAGGGTTTGGTTATTGGTTTTACTTAAAGCCAGAAGAGGCTCGCTTGAACAATTTGATTCAAGAGG
AGCAAACATTAAAAGTGGCATTGCGCATAAAAGCTAACAAGGTAGCTGCATTGCCTCAGTTGCAATCTCAACTGGACGAA
CTTACTACGCGTTATGAGTTGCTGTTGCAACAACTACCGGCACAAAAAGAGTTGGCCACAATGTTGGCGTCGGTAAACGA
ACTCGGTATCGACAACAAGTTAACGTTTACTCGCATCGATTGGGGAGAAAAGCAATCTGAAAACTTCCTGTATCGATTGC
CACTAAATATCGAGCTAACAGGTGATTTCCACGATATCGGTCGTTTTTCACAGGCCATTGCCACACTGCCACGCATCATC
ACCTTTAAAGACGTGACTTGGCAGCGTGTCAGCCAAGAGAGTGAAACTTTGCACTTCCGAGTGAGAGCAAACACTTATCA
GTTCAAGCCTGAGGAAAAGAAAGATGGGAAATAA
ATGGTTAATTGGCAAGATCTAGAAATGGATGAGATTGCTGAATGGCCATTACTGCCTCAGCTTGTAGTGATCTGCCTGCT
TGTTCTTCTTATCCAAGGGTTTGGTTATTGGTTTTACTTAAAGCCAGAAGAGGCTCGCTTGAACAATTTGATTCAAGAGG
AGCAAACATTAAAAGTGGCATTGCGCATAAAAGCTAACAAGGTAGCTGCATTGCCTCAGTTGCAATCTCAACTGGACGAA
CTTACTACGCGTTATGAGTTGCTGTTGCAACAACTACCGGCACAAAAAGAGTTGGCCACAATGTTGGCGTCGGTAAACGA
ACTCGGTATCGACAACAAGTTAACGTTTACTCGCATCGATTGGGGAGAAAAGCAATCTGAAAACTTCCTGTATCGATTGC
CACTAAATATCGAGCTAACAGGTGATTTCCACGATATCGGTCGTTTTTCACAGGCCATTGCCACACTGCCACGCATCATC
ACCTTTAAAGACGTGACTTGGCAGCGTGTCAGCCAAGAGAGTGAAACTTTGCACTTCCGAGTGAGAGCAAACACTTATCA
GTTCAAGCCTGAGGAAAAGAAAGATGGGAAATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Vibrio campbellii strain DS40M4 |
94.211 |
96.447 |
0.909 |
| pilO | Vibrio cholerae strain A1552 |
73.298 |
96.954 |
0.711 |