Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   QU579_RS01690 Genome accession   NZ_CP128803
Coordinates   357443..358459 (+) Length   338 a.a.
NCBI ID   WP_100662586.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain NJIFDCVp52     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 352443..363459
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QU579_RS01675 (QU579_01680) - 352867..353595 (-) 729 WP_015297397.1 redoxin family protein -
  QU579_RS01680 (QU579_01685) oxyR 353766..354674 (+) 909 WP_005465160.1 DNA-binding transcriptional regulator OxyR -
  QU579_RS01685 (QU579_01690) - 354730..357300 (-) 2571 WP_005496567.1 penicillin-binding protein 1A -
  QU579_RS01690 (QU579_01695) pilM 357443..358459 (+) 1017 WP_100662586.1 type IV pilus biogenesis protein PilM Machinery gene
  QU579_RS01695 (QU579_01700) pilN 358443..359021 (+) 579 WP_015297396.1 PilN domain-containing protein Machinery gene
  QU579_RS01700 (QU579_01705) pilO 359014..359607 (+) 594 WP_005496571.1 type 4a pilus biogenesis protein PilO Machinery gene
  QU579_RS01705 (QU579_01710) pilP 359597..360112 (+) 516 WP_025532853.1 pilus assembly protein PilP Machinery gene
  QU579_RS01710 (QU579_01715) pilQ 360144..361892 (+) 1749 WP_005488227.1 type IV pilus secretin PilQ Machinery gene
  QU579_RS01715 (QU579_01720) aroK 362081..362599 (+) 519 WP_005381319.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 338 a.a.        Molecular weight: 37772.32 Da        Isoelectric Point: 6.8323

>NTDB_id=849628 QU579_RS01690 WP_100662586.1 357443..358459(+) (pilM) [Vibrio parahaemolyticus strain NJIFDCVp52]
MDKLIVTGIDIGHNSLKAVVLKPIGDQYALLGYKEILLKEGIVAENNTINHQEIVKTLKQMKKELPFGAKRVAISVPDNS
VISKKLQIEQSLDESEIEFAVVQAFSHQSPFPVEELSLDFVRLRAEEGMRGTDSYQVFATRKDVVESRVEALQQSGLKPV
LVDVHSQSLGHIWKLAAERFPEKNKYCLLDIGSLASSFTMFTEQGELFHKEFACGTRISMGTPQEDLLSDDAQAKTEQFN
RQVVERVKRQMQLYTSINGSQNIKGIWLSGEGASTPMLAEELSHQLALECELLNPLGLFEMKVSKRKRRAADWQHFSTAA
GLAVRGIHWLGGVRAVSH

Nucleotide


Download         Length: 1017 bp        

>NTDB_id=849628 QU579_RS01690 WP_100662586.1 357443..358459(+) (pilM) [Vibrio parahaemolyticus strain NJIFDCVp52]
ATGGATAAGCTAATCGTTACCGGCATAGATATTGGCCATAACAGCCTCAAAGCCGTAGTACTTAAACCCATTGGCGATCA
ATACGCCTTACTGGGTTACAAAGAAATATTACTTAAGGAAGGTATTGTCGCTGAAAATAACACTATAAATCATCAAGAAA
TTGTAAAGACCCTAAAGCAGATGAAAAAAGAGCTGCCTTTTGGGGCCAAGCGAGTGGCAATTTCTGTTCCAGACAACTCA
GTTATTAGCAAGAAACTGCAAATCGAACAAAGCCTTGATGAGAGCGAAATCGAGTTTGCGGTGGTACAAGCTTTTTCTCA
TCAATCTCCTTTTCCTGTGGAAGAACTGAGTTTGGATTTCGTACGCCTTCGTGCGGAAGAAGGGATGCGTGGAACGGACA
GTTATCAAGTATTCGCTACGCGCAAAGATGTGGTTGAAAGCCGAGTTGAGGCGTTACAACAGTCTGGTTTAAAGCCTGTG
TTGGTTGACGTGCACTCTCAAAGCCTAGGTCATATCTGGAAGCTTGCCGCAGAGCGTTTTCCTGAAAAAAACAAATACTG
TTTGTTAGACATCGGCTCGCTAGCGAGTTCATTCACCATGTTTACCGAGCAAGGCGAACTGTTTCATAAGGAGTTTGCGT
GCGGTACTCGTATTTCAATGGGGACGCCACAAGAAGACTTACTCTCTGATGATGCTCAAGCCAAAACGGAACAGTTCAAT
CGTCAAGTGGTTGAGCGCGTAAAACGTCAAATGCAGCTCTATACCTCGATCAATGGTTCGCAAAACATCAAAGGCATTTG
GTTATCGGGCGAGGGGGCATCGACGCCAATGTTGGCAGAAGAGCTCTCGCATCAGTTGGCATTGGAGTGCGAGTTACTAA
ACCCACTCGGACTGTTTGAAATGAAAGTGTCGAAACGCAAGCGACGAGCGGCTGATTGGCAACATTTTTCGACAGCTGCA
GGGCTGGCGGTCCGTGGCATTCATTGGTTAGGAGGTGTGCGTGCTGTATCGCATTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(8-326)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Vibrio campbellii strain DS40M4

85.207

100

0.852
  pilM Vibrio cholerae strain A1552

48.665

99.704

0.485