Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   QU579_RS01705 Genome accession   NZ_CP128803
Coordinates   359597..360112 (+) Length   171 a.a.
NCBI ID   WP_025532853.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain NJIFDCVp52     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 354597..365112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QU579_RS01685 (QU579_01690) - 354730..357300 (-) 2571 WP_005496567.1 penicillin-binding protein 1A -
  QU579_RS01690 (QU579_01695) pilM 357443..358459 (+) 1017 WP_100662586.1 type IV pilus biogenesis protein PilM Machinery gene
  QU579_RS01695 (QU579_01700) pilN 358443..359021 (+) 579 WP_015297396.1 PilN domain-containing protein Machinery gene
  QU579_RS01700 (QU579_01705) pilO 359014..359607 (+) 594 WP_005496571.1 type 4a pilus biogenesis protein PilO Machinery gene
  QU579_RS01705 (QU579_01710) pilP 359597..360112 (+) 516 WP_025532853.1 pilus assembly protein PilP Machinery gene
  QU579_RS01710 (QU579_01715) pilQ 360144..361892 (+) 1749 WP_005488227.1 type IV pilus secretin PilQ Machinery gene
  QU579_RS01715 (QU579_01720) aroK 362081..362599 (+) 519 WP_005381319.1 shikimate kinase AroK -
  QU579_RS01720 (QU579_01725) aroB 362631..363731 (+) 1101 WP_023622897.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18828.96 Da        Isoelectric Point: 10.4351

>NTDB_id=849631 QU579_RS01705 WP_025532853.1 359597..360112(+) (pilP) [Vibrio parahaemolyticus strain NJIFDCVp52]
MGNKSLLTVLVSALLVGCQANDESLTDFIRGVESQARRDVEKLKPADKYIAVAYAPEVMRAPFELPKEATIATQPVARKD
CWQPPNRARSGKLEKFPLSQLRLKGVMGMGNTVSGLVQAPNGTVYKVKPGQYLGRNNGKVTHVTHSYLLINETLPDGLGC
WQKRKVKLALR

Nucleotide


Download         Length: 516 bp        

>NTDB_id=849631 QU579_RS01705 WP_025532853.1 359597..360112(+) (pilP) [Vibrio parahaemolyticus strain NJIFDCVp52]
ATGGGAAATAAATCTTTGCTGACGGTGTTGGTAAGCGCTCTATTGGTCGGGTGCCAGGCGAATGATGAATCATTAACGGA
TTTTATTCGTGGTGTTGAGAGCCAGGCTCGGCGAGATGTGGAGAAACTCAAACCTGCTGACAAATACATCGCAGTGGCGT
ATGCCCCAGAAGTGATGCGTGCTCCTTTCGAATTGCCTAAAGAGGCGACCATCGCAACTCAACCTGTGGCGAGAAAGGAT
TGTTGGCAACCGCCGAACCGAGCGAGATCTGGCAAGTTAGAAAAATTCCCACTCAGCCAACTTCGTTTAAAAGGAGTGAT
GGGTATGGGGAACACCGTTTCTGGTTTAGTACAAGCCCCGAATGGCACGGTTTACAAAGTGAAACCAGGTCAATACCTCG
GGCGCAATAACGGTAAGGTCACGCATGTTACCCACTCCTATTTGTTGATTAATGAAACCTTGCCCGATGGTTTGGGGTGC
TGGCAAAAACGTAAAGTTAAGTTGGCTTTGAGATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(25-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio campbellii strain DS40M4

83.041

100

0.83
  pilP Vibrio cholerae strain A1552

58.14

100

0.585