Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   QU593_RS00120 Genome accession   NZ_CP128801
Coordinates   19616..20152 (+) Length   178 a.a.
NCBI ID   WP_056539912.1    Uniprot ID   -
Organism   Rossellomorea marisflavi strain SRCM125375     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 14616..25152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QU593_RS00090 (QU593_00090) - 15452..15628 (-) 177 WP_156450693.1 hypothetical protein -
  QU593_RS00095 (QU593_00095) yyaC 15725..16342 (-) 618 WP_079513916.1 spore protease YyaC -
  QU593_RS00100 (QU593_00100) - 16566..17471 (+) 906 WP_056539914.1 mechanosensitive ion channel family protein -
  QU593_RS00105 (QU593_00105) - 17486..17683 (+) 198 WP_048004584.1 DUF951 domain-containing protein -
  QU593_RS00110 (QU593_00110) ychF 17964..19064 (+) 1101 WP_048004585.1 redox-regulated ATPase YchF -
  QU593_RS00115 (QU593_00115) rpsF 19273..19560 (+) 288 WP_053429896.1 30S ribosomal protein S6 -
  QU593_RS00120 (QU593_00120) ssbA 19616..20152 (+) 537 WP_056539912.1 single-stranded DNA-binding protein Machinery gene
  QU593_RS00125 (QU593_00125) rpsR 20196..20432 (+) 237 WP_048004588.1 30S ribosomal protein S18 -
  QU593_RS00130 (QU593_00130) - 20986..23025 (+) 2040 WP_290031706.1 methyl-accepting chemotaxis protein -
  QU593_RS00135 (QU593_00135) - 23217..24152 (+) 936 WP_290031707.1 YybS family protein -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19457.16 Da        Isoelectric Point: 4.7821

>NTDB_id=849573 QU593_RS00120 WP_056539912.1 19616..20152(+) (ssbA) [Rossellomorea marisflavi strain SRCM125375]
MMNRVVLVGRLTKDPELKYTPSGVAVASFTLAVNRSFTNQSGEREADFINCVVWRRPAENVANFLKKGSLAGVDGRIQTR
NFEGQDGRRVFMTEVVAESVQFLEPRSASQGGDRGGSPSYSGGGGGYQQGNQGGNSFGQNQNQQQRNNNNNNNYTRVDED
PFANDGQPIDISDDDLPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=849573 QU593_RS00120 WP_056539912.1 19616..20152(+) (ssbA) [Rossellomorea marisflavi strain SRCM125375]
ATGATGAACCGAGTTGTATTAGTGGGCCGATTAACCAAAGACCCTGAACTAAAATATACTCCAAGCGGAGTGGCTGTTGC
CTCATTCACACTGGCAGTGAATCGTTCTTTTACGAATCAATCAGGTGAACGGGAAGCAGATTTTATTAACTGTGTTGTTT
GGCGCCGACCTGCCGAGAACGTAGCGAACTTCCTTAAGAAAGGAAGCCTGGCCGGCGTTGACGGTCGAATCCAGACCCGT
AACTTCGAAGGACAGGATGGACGACGCGTGTTCATGACGGAAGTCGTGGCCGAAAGCGTTCAATTCCTTGAGCCTCGCAG
TGCGAGTCAAGGTGGAGATCGCGGCGGAAGCCCAAGCTATTCTGGCGGCGGTGGTGGTTACCAACAGGGTAACCAAGGTG
GTAACTCATTCGGCCAGAATCAGAATCAACAACAGCGCAACAACAATAATAACAATAACTACACTCGCGTAGATGAAGAT
CCATTCGCAAATGACGGTCAGCCGATCGACATTTCCGATGATGATCTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

69.613

100

0.708
  ssb Latilactobacillus sakei subsp. sakei 23K

52.432

100

0.545
  ssb Glaesserella parasuis strain SC1401

36.17

100

0.382
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.522

63.483

0.365