Detailed information
Bioinformatically predicted
Overview
| Name | pilU | Type | Machinery gene |
| Locus tag | JUH08_RS10570 | Genome accession | NZ_AP024354 |
| Coordinates | 2180069..2181274 (+) | Length | 401 a.a. |
| NCBI ID | WP_203792196.1 | Uniprot ID | A0AA37FM89 |
| Organism | Aquipseudomonas alcaligenes strain KAM426 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2175069..2186274
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JUH08_RS10545 (KAM426_20940) | - | 2175180..2175686 (+) | 507 | WP_021700158.1 | DUF1993 family protein | - |
| JUH08_RS10550 (KAM426_20950) | - | 2175744..2177330 (-) | 1587 | WP_203792194.1 | ABC-F family ATPase | - |
| JUH08_RS10555 (KAM426_20960) | sph | 2177458..2178969 (-) | 1512 | WP_203792195.1 | sphingomyelin phosphodiesterase | - |
| JUH08_RS10560 (KAM426_20970) | - | 2179205..2179645 (+) | 441 | WP_043216371.1 | YqaA family protein | - |
| JUH08_RS10565 (KAM426_20980) | - | 2179655..2179933 (-) | 279 | WP_021700093.1 | peptidylprolyl isomerase | - |
| JUH08_RS10570 (KAM426_20990) | pilU | 2180069..2181274 (+) | 1206 | WP_203792196.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| JUH08_RS10575 (KAM426_21000) | - | 2181299..2181892 (-) | 594 | WP_203792197.1 | hypothetical protein | - |
| JUH08_RS10580 (KAM426_21010) | maoP | 2182186..2182752 (-) | 567 | WP_203792198.1 | DUF413 domain-containing protein | - |
| JUH08_RS10585 (KAM426_21030) | - | 2182927..2184198 (+) | 1272 | WP_203788979.1 | IS4-like element ISPa1635 family transposase | - |
| JUH08_RS10590 (KAM426_21040) | - | 2184486..2185031 (-) | 546 | WP_203792199.1 | hypothetical protein | - |
| JUH08_RS10595 (KAM426_21050) | - | 2185176..2185916 (-) | 741 | WP_003159548.1 | subclass B1 metallo-beta-lactamase IMP-1 | - |
Sequence
Protein
Download Length: 401 a.a. Molecular weight: 44364.69 Da Isoelectric Point: 6.1302
>NTDB_id=84949 JUH08_RS10570 WP_203792196.1 2180069..2181274(+) (pilU) [Aquipseudomonas alcaligenes strain KAM426]
MDLSQMLKILSSQDGSDLYLSTGAPPCAKFNGVLKPLSQEPLKPGDVAAIANSVMDAEQRAEFEKELEMNLAISVPNVGR
FRINIFKQRNEVSIVARNIKMDIPKFEDLKLPEVLLQTVMEKRGLVLFVGGTGSGKSTSLAALIDYRNRNSGGHIITIED
PVEYVHRHKKSIINQREVGVDTRSFHAALKNTLRQAPDVILIGEIRDRETMEHALAFADTGHLAISTLHANNANQALDRI
INFFPEERRPQLLNDLGNNLRAFVSQRLVKTVDGKRRAAVEVMLGTPTVRDLIKRNEFSELKEIMEKSKNLGMQTFDQAL
IDLVHEGAIDEEEAVKNADSANNVRLKLKLYKDNPTAPQAAAPASAPVAAPTAAPANWAMELKLEEIEQDTPPEDPGRPS
F
MDLSQMLKILSSQDGSDLYLSTGAPPCAKFNGVLKPLSQEPLKPGDVAAIANSVMDAEQRAEFEKELEMNLAISVPNVGR
FRINIFKQRNEVSIVARNIKMDIPKFEDLKLPEVLLQTVMEKRGLVLFVGGTGSGKSTSLAALIDYRNRNSGGHIITIED
PVEYVHRHKKSIINQREVGVDTRSFHAALKNTLRQAPDVILIGEIRDRETMEHALAFADTGHLAISTLHANNANQALDRI
INFFPEERRPQLLNDLGNNLRAFVSQRLVKTVDGKRRAAVEVMLGTPTVRDLIKRNEFSELKEIMEKSKNLGMQTFDQAL
IDLVHEGAIDEEEAVKNADSANNVRLKLKLYKDNPTAPQAAAPASAPVAAPTAAPANWAMELKLEEIEQDTPPEDPGRPS
F
Nucleotide
Download Length: 1206 bp
>NTDB_id=84949 JUH08_RS10570 WP_203792196.1 2180069..2181274(+) (pilU) [Aquipseudomonas alcaligenes strain KAM426]
ATGGACCTTTCCCAGATGCTGAAAATCCTGTCCAGCCAGGACGGATCCGACCTCTACCTGTCCACCGGGGCACCGCCCTG
CGCCAAGTTCAACGGCGTGCTCAAGCCGCTCAGCCAGGAGCCGCTCAAGCCGGGTGACGTCGCCGCCATCGCCAATAGTG
TGATGGACGCCGAGCAGCGCGCCGAGTTCGAGAAGGAGCTGGAGATGAACCTGGCCATCTCGGTGCCCAATGTCGGCCGC
TTCCGCATCAACATCTTCAAGCAGCGCAATGAGGTGTCCATCGTCGCGCGCAACATCAAGATGGACATTCCCAAGTTCGA
GGACCTCAAGCTGCCCGAGGTGCTGCTGCAGACGGTGATGGAGAAGCGCGGCCTGGTGCTGTTCGTCGGTGGTACCGGCT
CGGGCAAGTCGACCTCCCTGGCGGCGCTGATCGATTACCGCAACCGCAACAGCGGCGGCCACATCATCACCATCGAGGAC
CCGGTGGAGTACGTGCACCGGCACAAGAAGTCGATCATCAACCAGCGCGAAGTCGGCGTAGACACGCGCAGCTTCCACGC
CGCGCTGAAGAACACCCTGCGCCAGGCGCCGGACGTGATCCTGATCGGCGAGATCCGCGACCGCGAAACCATGGAACACG
CCCTGGCCTTCGCCGACACCGGCCACCTGGCCATTTCCACCCTGCATGCCAACAACGCCAACCAGGCGCTGGACCGCATC
ATCAACTTCTTCCCCGAAGAGCGCCGCCCGCAGCTGCTCAATGATCTCGGCAACAACCTGCGCGCCTTCGTTTCCCAGCG
CCTGGTCAAGACCGTCGATGGCAAACGCCGTGCCGCCGTGGAGGTGATGCTCGGCACGCCGACCGTACGCGACCTGATCA
AGCGCAACGAGTTCTCCGAGCTCAAGGAGATCATGGAGAAGTCGAAGAACCTCGGCATGCAGACCTTCGACCAGGCGCTG
ATCGACCTCGTCCATGAAGGCGCCATCGACGAGGAAGAGGCGGTGAAGAACGCCGACTCGGCCAACAACGTGCGCCTCAA
GCTCAAGCTGTACAAGGACAACCCCACCGCCCCGCAGGCTGCCGCCCCGGCGTCCGCACCCGTCGCAGCGCCCACGGCGG
CACCGGCCAACTGGGCGATGGAGCTCAAGCTCGAGGAAATCGAGCAAGACACCCCACCGGAAGACCCCGGCCGCCCGAGC
TTCTAA
ATGGACCTTTCCCAGATGCTGAAAATCCTGTCCAGCCAGGACGGATCCGACCTCTACCTGTCCACCGGGGCACCGCCCTG
CGCCAAGTTCAACGGCGTGCTCAAGCCGCTCAGCCAGGAGCCGCTCAAGCCGGGTGACGTCGCCGCCATCGCCAATAGTG
TGATGGACGCCGAGCAGCGCGCCGAGTTCGAGAAGGAGCTGGAGATGAACCTGGCCATCTCGGTGCCCAATGTCGGCCGC
TTCCGCATCAACATCTTCAAGCAGCGCAATGAGGTGTCCATCGTCGCGCGCAACATCAAGATGGACATTCCCAAGTTCGA
GGACCTCAAGCTGCCCGAGGTGCTGCTGCAGACGGTGATGGAGAAGCGCGGCCTGGTGCTGTTCGTCGGTGGTACCGGCT
CGGGCAAGTCGACCTCCCTGGCGGCGCTGATCGATTACCGCAACCGCAACAGCGGCGGCCACATCATCACCATCGAGGAC
CCGGTGGAGTACGTGCACCGGCACAAGAAGTCGATCATCAACCAGCGCGAAGTCGGCGTAGACACGCGCAGCTTCCACGC
CGCGCTGAAGAACACCCTGCGCCAGGCGCCGGACGTGATCCTGATCGGCGAGATCCGCGACCGCGAAACCATGGAACACG
CCCTGGCCTTCGCCGACACCGGCCACCTGGCCATTTCCACCCTGCATGCCAACAACGCCAACCAGGCGCTGGACCGCATC
ATCAACTTCTTCCCCGAAGAGCGCCGCCCGCAGCTGCTCAATGATCTCGGCAACAACCTGCGCGCCTTCGTTTCCCAGCG
CCTGGTCAAGACCGTCGATGGCAAACGCCGTGCCGCCGTGGAGGTGATGCTCGGCACGCCGACCGTACGCGACCTGATCA
AGCGCAACGAGTTCTCCGAGCTCAAGGAGATCATGGAGAAGTCGAAGAACCTCGGCATGCAGACCTTCGACCAGGCGCTG
ATCGACCTCGTCCATGAAGGCGCCATCGACGAGGAAGAGGCGGTGAAGAACGCCGACTCGGCCAACAACGTGCGCCTCAA
GCTCAAGCTGTACAAGGACAACCCCACCGCCCCGCAGGCTGCCGCCCCGGCGTCCGCACCCGTCGCAGCGCCCACGGCGG
CACCGGCCAACTGGGCGATGGAGCTCAAGCTCGAGGAAATCGAGCAAGACACCCCACCGGAAGACCCCGGCCGCCCGAGC
TTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilU | Pseudomonas stutzeri DSM 10701 |
56.125 |
87.531 |
0.491 |
| pilU | Vibrio cholerae strain A1552 |
52.286 |
87.282 |
0.456 |
| pilU | Acinetobacter baylyi ADP1 |
51.42 |
87.781 |
0.451 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
39.037 |
93.267 |
0.364 |