Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   JUH08_RS04340 Genome accession   NZ_AP024354
Coordinates   933310..934650 (-) Length   446 a.a.
NCBI ID   WP_203790847.1    Uniprot ID   A0AA37CHY5
Organism   Aquipseudomonas alcaligenes strain KAM426     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 928310..939650
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JUH08_RS04310 (KAM426_08580) - 928925..930196 (-) 1272 WP_203788979.1 IS4-like element ISPa1635 family transposase -
  JUH08_RS04315 (KAM426_08600) - 930323..930517 (-) 195 Protein_850 PilW family protein -
  JUH08_RS04320 (KAM426_08610) pilV 930526..931017 (-) 492 WP_203790840.1 type IV pilus modification protein PilV Machinery gene
  JUH08_RS04325 (KAM426_08620) - 931014..931472 (-) 459 WP_203792335.1 GspH/FimT family pseudopilin -
  JUH08_RS04330 (KAM426_08630) - 931577..932089 (-) 513 WP_203790843.1 GspH/FimT family pseudopilin -
  JUH08_RS04335 (KAM426_08640) thiO 932193..933293 (+) 1101 WP_203790845.1 glycine oxidase ThiO -
  JUH08_RS04340 (KAM426_08650) pilR 933310..934650 (-) 1341 WP_203790847.1 sigma-54 dependent transcriptional regulator Regulator
  JUH08_RS04345 (KAM426_08660) pilS 934653..936245 (-) 1593 WP_203790849.1 PAS domain-containing sensor histidine kinase Regulator
  JUH08_RS04350 (KAM426_08670) - 936242..936466 (-) 225 WP_061905387.1 PP0621 family protein -
  JUH08_RS04355 (KAM426_08680) - 936588..937610 (-) 1023 WP_142136537.1 outer membrane protein assembly factor BamD -
  JUH08_RS04360 (KAM426_08690) rluD 937758..938729 (+) 972 WP_203790851.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  JUH08_RS04365 (KAM426_08700) pgeF 938713..939450 (+) 738 WP_203790853.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49764.20 Da        Isoelectric Point: 5.8235

>NTDB_id=84934 JUH08_RS04340 WP_203790847.1 933310..934650(-) (pilR) [Aquipseudomonas alcaligenes strain KAM426]
MSTRQRALIVDDEPDIRELLEITLGRMKLDTRSARNVKEAREWLAREPFDLCLTDMRLPDGTGLDLVQHIQQRHAEVPVA
MITAYGSLDTAINALKAGAFDFLTKPVDLGRLRELVATALRLRSGETTEGPVDTRLLGESPPMKALRNQIQKLARSQAPV
YISGESGSGKELVARLIHEQGPRAEKPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKQGLFQAANGGTLFLDEVADL
PLAMQVKLLRAIQEKAVRAVGGQQEVVVDVRILCATHKDLAAEVAAERFRQDLFYRLNVIELRVPPLRERREDIPLLADT
MLKRLAEGSGLPAARLSLEALDKLKCYRFPGNVRELENMLERAYTLCENDQIQAADLRLADAAPASEGSEACLAQIDNLE
DHLEDIERRLIMQALEETRWNRTAAAQRLGLSFRSMRYRLKKLGID

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=84934 JUH08_RS04340 WP_203790847.1 933310..934650(-) (pilR) [Aquipseudomonas alcaligenes strain KAM426]
ATGAGCACCCGGCAAAGAGCCCTGATCGTCGACGACGAGCCCGATATCCGCGAACTCCTGGAGATCACCCTGGGGCGGAT
GAAGCTCGACACTCGCAGCGCCCGCAACGTCAAGGAAGCCCGCGAGTGGCTGGCCCGGGAGCCTTTCGACCTGTGCCTGA
CCGACATGCGCCTGCCCGACGGCACCGGCCTGGACCTGGTCCAGCACATCCAGCAGCGCCATGCCGAAGTACCGGTCGCC
ATGATCACGGCCTACGGCAGCCTGGACACTGCGATCAACGCCCTCAAGGCCGGTGCCTTCGACTTCCTCACCAAGCCGGT
GGACCTCGGCCGCCTGCGCGAGCTGGTCGCCACCGCCCTGCGCCTGCGCAGCGGCGAAACCACGGAGGGACCGGTAGACA
CCCGCCTGCTCGGCGAATCGCCGCCAATGAAGGCGTTGCGCAACCAGATCCAGAAGCTCGCGCGCAGCCAGGCGCCGGTC
TATATCAGCGGCGAGTCCGGTAGCGGCAAGGAGCTGGTGGCGCGCCTGATCCACGAGCAAGGCCCGCGCGCCGAGAAGCC
CTTCGTACCGGTCAACTGCGGCGCCATCCCGTCAGAACTGATGGAAAGCGAATTCTTCGGCCACAAGAAAGGCAGCTTCA
CCGGTGCGATAGAGGACAAGCAGGGCCTGTTCCAGGCGGCCAATGGCGGCACCCTGTTCCTCGACGAAGTGGCCGACCTG
CCGCTGGCCATGCAGGTCAAGCTGCTGCGCGCCATTCAGGAAAAAGCCGTGCGTGCCGTCGGCGGCCAACAGGAGGTGGT
GGTGGACGTACGCATCCTCTGCGCCACACACAAGGATCTGGCTGCCGAAGTCGCTGCAGAGCGCTTCCGTCAGGATCTGT
TCTATCGCCTGAACGTCATCGAGCTGCGCGTACCGCCGCTGCGCGAGCGCCGCGAGGACATCCCGCTGCTGGCTGACACC
ATGCTTAAACGCCTCGCCGAGGGCAGCGGCCTGCCGGCGGCCCGCCTGAGCCTGGAGGCGCTGGACAAGCTCAAGTGCTA
CCGCTTTCCCGGCAACGTGCGCGAACTGGAGAACATGCTGGAGCGCGCCTACACCCTGTGCGAGAACGACCAGATCCAGG
CCGCCGACCTGCGCCTGGCCGATGCCGCCCCGGCCAGCGAAGGCAGCGAGGCCTGCCTGGCCCAGATCGACAACCTCGAA
GACCATCTGGAAGACATCGAGCGCAGGCTGATCATGCAGGCGCTGGAAGAAACCCGCTGGAACCGCACAGCCGCCGCCCA
GCGCCTGGGCCTGAGCTTCCGCTCCATGCGCTATCGCCTGAAGAAGCTGGGGATCGACTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(136-302)

Bacterial regulatory protein, Fis family (HTH_8)

(403-443)

Response regulator receiver domain (Response_reg)

(8-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

88.288

99.552

0.879
  pilR Acinetobacter baumannii strain A118

49.455

100

0.509

Multiple sequence alignment