Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   JUH08_RS04320 Genome accession   NZ_AP024354
Coordinates   930526..931017 (-) Length   163 a.a.
NCBI ID   WP_203790840.1    Uniprot ID   A0AA37FMS8
Organism   Aquipseudomonas alcaligenes strain KAM426     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 928925..930196 930526..931017 flank 330


Gene organization within MGE regions


Location: 928925..931017
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JUH08_RS04310 (KAM426_08580) - 928925..930196 (-) 1272 WP_203788979.1 IS4-like element ISPa1635 family transposase -
  JUH08_RS04315 (KAM426_08600) - 930323..930517 (-) 195 Protein_850 PilW family protein -
  JUH08_RS04320 (KAM426_08610) pilV 930526..931017 (-) 492 WP_203790840.1 type IV pilus modification protein PilV Machinery gene

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 17551.14 Da        Isoelectric Point: 5.1343

>NTDB_id=84933 JUH08_RS04320 WP_203790840.1 930526..931017(-) (pilV) [Aquipseudomonas alcaligenes strain KAM426]
MSSRFFSQRGFSMVEVLVTIILISIGILGMVAMQSKTIVYTQDSVQRNTAAMLADDLMEIMRTNASAPSGYYKAMGTAFP
TAASSCEPLPNSPQQRLGCWAARTAAALPGAADLGTAEYEVKAEGRAISIRLAWRTQDGQCLDPTRTAADQQTICVYTLV
SEL

Nucleotide


Download         Length: 492 bp        

>NTDB_id=84933 JUH08_RS04320 WP_203790840.1 930526..931017(-) (pilV) [Aquipseudomonas alcaligenes strain KAM426]
ATGAGTAGCCGCTTTTTTTCACAACGCGGATTCAGCATGGTTGAAGTACTGGTCACGATCATTTTGATCAGTATCGGCAT
ATTAGGCATGGTCGCCATGCAGTCCAAAACGATCGTCTATACCCAAGACTCTGTACAGCGCAACACCGCAGCCATGCTGG
CCGATGACTTGATGGAAATCATGCGCACCAACGCCAGCGCCCCGAGTGGCTACTACAAAGCGATGGGCACTGCATTCCCA
ACTGCCGCCAGCAGCTGCGAGCCGCTGCCGAACAGCCCGCAACAACGCCTCGGCTGCTGGGCCGCACGGACTGCAGCGGC
ACTGCCGGGCGCTGCCGACTTGGGTACGGCGGAATATGAAGTCAAGGCAGAGGGACGCGCTATCAGCATCCGCCTGGCCT
GGCGCACGCAGGATGGGCAATGCCTCGATCCCACCCGCACTGCAGCCGACCAACAGACTATCTGCGTATACACCCTGGTA
TCGGAACTCTAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-30)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

47.191

100

0.515

Multiple sequence alignment