Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   JUH08_RS04345 Genome accession   NZ_AP024354
Coordinates   934653..936245 (-) Length   530 a.a.
NCBI ID   WP_203790849.1    Uniprot ID   A0AA37CHA5
Organism   Aquipseudomonas alcaligenes strain KAM426     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 929653..941245
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JUH08_RS04315 (KAM426_08600) - 930323..930517 (-) 195 Protein_850 PilW family protein -
  JUH08_RS04320 (KAM426_08610) pilV 930526..931017 (-) 492 WP_203790840.1 type IV pilus modification protein PilV Machinery gene
  JUH08_RS04325 (KAM426_08620) - 931014..931472 (-) 459 WP_203792335.1 GspH/FimT family pseudopilin -
  JUH08_RS04330 (KAM426_08630) - 931577..932089 (-) 513 WP_203790843.1 GspH/FimT family pseudopilin -
  JUH08_RS04335 (KAM426_08640) thiO 932193..933293 (+) 1101 WP_203790845.1 glycine oxidase ThiO -
  JUH08_RS04340 (KAM426_08650) pilR 933310..934650 (-) 1341 WP_203790847.1 sigma-54 dependent transcriptional regulator Regulator
  JUH08_RS04345 (KAM426_08660) pilS 934653..936245 (-) 1593 WP_203790849.1 PAS domain-containing sensor histidine kinase Regulator
  JUH08_RS04350 (KAM426_08670) - 936242..936466 (-) 225 WP_061905387.1 PP0621 family protein -
  JUH08_RS04355 (KAM426_08680) - 936588..937610 (-) 1023 WP_142136537.1 outer membrane protein assembly factor BamD -
  JUH08_RS04360 (KAM426_08690) rluD 937758..938729 (+) 972 WP_203790851.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  JUH08_RS04365 (KAM426_08700) pgeF 938713..939450 (+) 738 WP_203790853.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 59134.45 Da        Isoelectric Point: 7.8529

>NTDB_id=84935 JUH08_RS04345 WP_203790849.1 934653..936245(-) (pilS) [Aquipseudomonas alcaligenes strain KAM426]
MSSEQLTLDGVPGRRILRLYNLYRVIIGLALVLLISSDLDDQLLELAHAQLFRYGSWTYLILNVLVAVLLQRPSHLAQVF
SLALLDVLLLCTLFFAAGGTPSGIGNLLIVAVAIANILLRGRIGLLIAAVAAIGMLALTFYLSLLRNTPAPQFVQAGALG
ALCFAAAIFLQGLASRLQQSEFLAEQRAVDVASLEALNSLILQRMRTGILVLDKQHRVLLANQGALSMLGRSKLEHKLLD
PHCPELVQRLQQWQHNPTLRPQSLQAMPDGPLLQPSFIPLQRSGEQHTLIFLDDISQVTQQAQQLKLASLGRLTAGIAHE
IRNPLGAISHAAQLLQESEDLEEPDRRLAQIIQDHSRRMNTVIENVLQLSRRRQAEPQLLDLKYWLHRFASEFRSSARPD
QTLHLETQSGSLQTRMDPHQLTQILSNLVQNGLRYSAQKHQLGQVWLKLYRDPESDLPTLEVLDDGPGVPVDQMQHIFEP
FYTTDNKGTGLGLYISRELCESNQARLDYKLREGGGSCFRITFAHPRKLS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=84935 JUH08_RS04345 WP_203790849.1 934653..936245(-) (pilS) [Aquipseudomonas alcaligenes strain KAM426]
GTGAGCAGCGAGCAACTGACCCTCGACGGCGTCCCCGGCAGACGCATACTGCGCCTCTACAACCTCTATCGGGTGATCAT
CGGTCTGGCGCTGGTGCTGCTGATTTCCAGCGACCTGGACGACCAGTTGCTGGAGCTGGCACACGCCCAGCTGTTCCGCT
ATGGCAGCTGGACCTACCTGATACTCAACGTGCTGGTCGCCGTACTGCTGCAGCGTCCAAGCCACCTGGCCCAGGTCTTC
AGCCTGGCACTGCTCGACGTGCTACTGCTGTGTACCCTGTTCTTCGCCGCAGGCGGCACCCCGAGCGGCATCGGTAACCT
GCTGATAGTCGCAGTGGCCATCGCCAACATCCTGCTGCGCGGCCGTATCGGCCTACTGATCGCCGCCGTCGCCGCCATCG
GCATGCTGGCCCTTACCTTCTATCTCAGCCTGCTGCGCAACACGCCAGCTCCGCAGTTCGTCCAGGCAGGCGCCCTCGGC
GCCCTGTGCTTCGCCGCGGCAATCTTCCTCCAGGGCCTGGCCAGCCGACTGCAGCAGAGCGAGTTCCTGGCCGAACAGCG
TGCCGTCGATGTTGCCAGCCTGGAGGCACTCAACTCGCTGATCCTGCAACGCATGCGCACCGGCATCCTGGTCCTGGACA
AGCAGCATCGCGTGTTGCTGGCCAATCAGGGCGCCCTCAGCATGCTCGGGCGCAGCAAGCTGGAGCACAAACTGCTCGAC
CCGCACTGCCCGGAGCTGGTCCAGCGCCTGCAGCAGTGGCAGCACAACCCGACCCTGCGCCCGCAGAGCCTGCAGGCCAT
GCCGGACGGCCCGTTGCTGCAGCCAAGCTTCATCCCGCTGCAACGCAGCGGAGAACAGCACACCCTGATCTTCCTCGACG
ATATCTCGCAGGTCACCCAGCAGGCCCAGCAGCTCAAGCTGGCCTCCCTGGGTCGCCTGACCGCCGGCATCGCCCACGAG
ATCCGCAACCCGCTAGGCGCGATCAGCCACGCCGCCCAGCTGCTGCAGGAGTCTGAGGACCTGGAAGAGCCGGATCGGCG
CCTGGCGCAGATCATCCAGGACCATTCGCGGCGCATGAATACGGTGATCGAAAACGTCCTGCAACTGTCGCGCAGGCGTC
AGGCCGAGCCTCAGCTGCTCGACCTGAAATACTGGCTGCACCGCTTCGCCAGCGAGTTCCGCAGTTCCGCACGGCCGGAC
CAGACACTGCACCTGGAGACCCAGAGCGGCAGCCTGCAGACTCGCATGGACCCGCACCAGCTGACGCAGATTCTGAGCAA
TCTGGTGCAAAACGGCCTGCGCTACAGCGCGCAGAAGCACCAACTTGGACAGGTCTGGCTCAAGCTCTATCGCGATCCGG
AGAGCGACCTGCCGACACTCGAGGTGCTGGATGACGGCCCCGGCGTACCGGTCGACCAGATGCAGCACATCTTCGAACCC
TTCTACACCACGGACAACAAGGGCACCGGCCTCGGCCTGTATATTTCCCGCGAACTGTGCGAGAGCAATCAAGCACGCCT
CGATTACAAACTGCGAGAGGGTGGTGGCAGTTGCTTCCGCATCACCTTCGCCCACCCACGCAAGCTGAGCTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

66.415

100

0.664

Multiple sequence alignment