Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KI242_RS28135 Genome accession   NZ_AP024342
Coordinates   6210532..6211041 (-) Length   169 a.a.
NCBI ID   WP_011063767.1    Uniprot ID   -
Organism   Pseudomonas sp. Eqa60     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6205532..6216041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI242_RS28120 (PEQA60_56100) - 6206252..6207538 (+) 1287 WP_212805729.1 hypothetical protein -
  KI242_RS28125 (PEQA60_56110) - 6207542..6209367 (+) 1826 Protein_5574 hypothetical protein -
  KI242_RS28130 (PEQA60_56130) - 6209382..6210434 (+) 1053 WP_212805730.1 hypothetical protein -
  KI242_RS28135 (PEQA60_56140) ssb 6210532..6211041 (-) 510 WP_011063767.1 single-stranded DNA-binding protein Machinery gene
  KI242_RS28140 (PEQA60_56150) - 6211051..6212445 (-) 1395 WP_011063768.1 MFS transporter -
  KI242_RS28145 (PEQA60_56160) uvrA 6212624..6215458 (+) 2835 WP_019094235.1 excinuclease ABC subunit UvrA -
  KI242_RS28150 (PEQA60_56170) bfr 6215577..6216041 (-) 465 WP_011063770.1 bacterioferritin -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18784.96 Da        Isoelectric Point: 5.9455

>NTDB_id=84892 KI242_RS28135 WP_011063767.1 6210532..6211041(-) (ssb) [Pseudomonas sp. Eqa60]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVERTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIIVDMQGTMQLLGGRPQGDQQGQGGMSNSAPRPQQSRPAPQPQRESRPAPQQAAPQPAPDF
DSFDDDIPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=84892 KI242_RS28135 WP_011063767.1 6210532..6211041(-) (ssb) [Pseudomonas sp. Eqa60]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCCGAAGTTCGCTACCTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCCACCAGCGAGCAGTGGACCGACAAGCAGACCGGTCAGAAGGTCGAGCGCACCGAGT
GGCACCGCGTGTCGATGTTCGGCAAGGTCGCGGAGATCGCCGGTGAATACCTGCGCAAGGGTTCGCAGGTCTACATCGAG
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGTATCAAGCGCTACACCACCGAAATCATCGTCGACATGCAGGGCAC
CATGCAGCTGCTGGGTGGCCGTCCACAGGGCGACCAGCAAGGCCAGGGCGGCATGTCCAACTCGGCACCGCGTCCACAGC
AGTCCCGTCCTGCTCCGCAGCCTCAGCGTGAGTCGCGTCCAGCTCCACAGCAGGCCGCTCCACAGCCGGCTCCGGACTTC
GACAGCTTCGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.932

100

0.586
  ssb Glaesserella parasuis strain SC1401

48.066

100

0.515
  ssb Neisseria gonorrhoeae MS11

47.727

100

0.497
  ssb Neisseria meningitidis MC58

47.159

100

0.491

Multiple sequence alignment