Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   V5G07_RS02700 Genome accession   NZ_CP145015
Coordinates   519503..520111 (+) Length   202 a.a.
NCBI ID   WP_003690900.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_Z_2024     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 514503..525111
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G07_RS02675 (V5G07_02680) - 514822..515403 (-) 582 WP_003690895.1 superoxide dismutase -
  V5G07_RS02680 (V5G07_02685) dnaB 515567..516973 (+) 1407 WP_003690896.1 replicative DNA helicase -
  V5G07_RS02685 (V5G07_02690) pilH 517281..517946 (+) 666 WP_003690897.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  V5G07_RS02690 (V5G07_02695) pilV/pilI 517978..518586 (+) 609 WP_106178882.1 type IV pilus modification protein PilV Regulator
  V5G07_RS02695 (V5G07_02700) pilJ 518583..519524 (+) 942 WP_003690899.1 PilW family protein Machinery gene
  V5G07_RS02700 (V5G07_02705) pilK 519503..520111 (+) 609 WP_003690900.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  V5G07_RS02705 (V5G07_02710) pilL 520113..520586 (+) 474 WP_025455782.1 PilX family type IV pilin Machinery gene
  V5G07_RS02710 (V5G07_02715) - 521198..521643 (-) 446 Protein_523 AzlC family ABC transporter permease -
  V5G07_RS02715 (V5G07_02720) dut 521809..522261 (+) 453 WP_003690909.1 dUTP diphosphatase -
  V5G07_RS02720 (V5G07_02725) dapC 522339..523526 (+) 1188 WP_003690911.1 succinyldiaminopimelate transaminase -
  V5G07_RS02725 (V5G07_02730) yaaA 523682..524461 (+) 780 WP_003690913.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 22023.05 Da        Isoelectric Point: 7.5810

>NTDB_id=848478 V5G07_RS02700 WP_003690900.1 519503..520111(+) (pilK) [Neisseria gonorrhoeae strain WHO_Z_2024]
MRKQNALTGIPTSEGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYTA
DSKVTFSENCENGLCTAVNVRTNDANEETFDNIVVKGKPTVEAVKRPCPAKSGKNSAGLCIDNKGMEYNKGVAGVSKMPR
YIIEYLGVKNGQNVYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=848478 V5G07_RS02700 WP_003690900.1 519503..520111(+) (pilK) [Neisseria gonorrhoeae strain WHO_Z_2024]
ATGCGCAAACAGAACGCTTTGACAGGAATCCCGACTTCTGAGGGACAGAGGGGGTTCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAACAGAGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGAGGGAAGGCGAATTTCAGGTTTTGGATTTGGAATATACTGCG
GATAGTAAGGTTACATTTAGCGAAAACTGTGAAAACGGCCTGTGTACCGCAGTGAATGTACGGACAAATGATGCTAATGA
AGAGACTTTTGACAATATCGTGGTGAAAGGCAAGCCTACCGTTGAGGCCGTGAAGCGTCCTTGCCCTGCAAAGTCTGGCA
AAAATTCTGCCGGTCTGTGCATTGACAATAAAGGGATGGAATATAATAAAGGCGTGGCAGGCGTCAGCAAAATGCCGCGC
TATATTATCGAATATTTAGGCGTGAAGAACGGACAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAA
TACCGTGGTCGTCCTTCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterProScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-197)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

89.163

100

0.896