Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   QTV64_RS10800 Genome accession   NZ_CP128528
Coordinates   2078270..2078608 (+) Length   112 a.a.
NCBI ID   WP_006251644.1    Uniprot ID   A0A248ZWT2
Organism   Mannheimia haemolytica strain 142101     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2073270..2083608
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QTV64_RS10775 rpsL 2073509..2073883 (-) 375 WP_005543325.1 30S ribosomal protein S12 -
  QTV64_RS10780 rfaC 2074004..2074963 (-) 960 WP_006250332.1 lipopolysaccharide heptosyltransferase RfaC -
  QTV64_RS10785 waaF 2075030..2076067 (-) 1038 WP_006250331.1 lipopolysaccharide heptosyltransferase II -
  QTV64_RS10790 - 2076178..2076594 (-) 417 WP_006250330.1 MliC family protein -
  QTV64_RS10795 - 2076658..2077977 (-) 1320 WP_006253337.1 LysM-like peptidoglycan-binding domain-containing protein -
  QTV64_RS10800 comEA/comE1 2078270..2078608 (+) 339 WP_006251644.1 ComEA family DNA-binding protein Machinery gene
  QTV64_RS10805 asd 2078773..2079666 (+) 894 WP_006250004.1 archaetidylserine decarboxylase -
  QTV64_RS10810 hsdR 2079738..2082089 (+) 2352 WP_006250003.1 EcoAI/FtnUII family type I restriction enzme subunit R -
  QTV64_RS10815 - 2082137..2083606 (+) 1470 WP_006250002.1 class I SAM-dependent DNA methyltransferase -

Sequence

Protein


Download         Length: 112 a.a.        Molecular weight: 12111.91 Da        Isoelectric Point: 10.0993

>NTDB_id=848458 QTV64_RS10800 WP_006251644.1 2078270..2078608(+) (comEA/comE1) [Mannheimia haemolytica strain 142101]
MKKIKQLGLTFLFGLNAMAFAQTPPTTMPVEQNAVTQPVQQTQITNANAVNINTASAAELQDKLVGIGQKKAQAIVDYRT
KNGNFKNIEQLAEVSGIGQATVEKNRANIILE

Nucleotide


Download         Length: 339 bp        

>NTDB_id=848458 QTV64_RS10800 WP_006251644.1 2078270..2078608(+) (comEA/comE1) [Mannheimia haemolytica strain 142101]
ATGAAGAAAATCAAACAACTTGGTCTAACATTCTTGTTTGGCTTAAATGCAATGGCTTTTGCCCAAACACCGCCAACTAC
AATGCCTGTTGAACAAAATGCAGTCACTCAACCCGTACAGCAAACACAAATCACCAACGCTAATGCGGTAAATATCAATA
CTGCTAGTGCTGCTGAATTGCAAGACAAGCTAGTGGGAATTGGGCAGAAAAAAGCTCAAGCGATTGTCGATTACCGTACT
AAAAACGGCAATTTTAAAAACATTGAGCAACTTGCTGAAGTCTCCGGAATTGGGCAAGCAACGGTAGAAAAAAATCGAGC
CAATATTATTTTAGAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(46-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A248ZWT2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

59.292

100

0.598
  comE1/comEA Haemophilus influenzae Rd KW20

52.747

81.25

0.429
  comEA Vibrio cholerae C6706

54.651

76.786

0.42
  comEA Vibrio cholerae strain A1552

54.651

76.786

0.42