Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   V5099_RS21155 Genome accession   NZ_CP144928
Coordinates   4287628..4288164 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain SCPM-O-B-12142     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4282628..4293164
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5099_RS21135 (V5099_21135) soxR 4284356..4284820 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  V5099_RS21140 (V5099_21140) soxS 4284906..4285229 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  V5099_RS21145 (V5099_21145) pdeC 4285232..4286818 (-) 1587 WP_016241058.1 c-di-GMP phosphodiesterase PdeC -
  V5099_RS21150 (V5099_21150) yjcB 4287248..4287529 (+) 282 WP_001295689.1 YjcB family protein -
  V5099_RS21155 (V5099_21155) ssb 4287628..4288164 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  V5099_RS21160 (V5099_21160) uvrA 4288418..4291240 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  V5099_RS21165 (V5099_21165) yjbR 4291275..4291631 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  V5099_RS21170 (V5099_21170) yjbQ 4291635..4292047 (-) 413 Protein_4137 secondary thiamine-phosphate synthase enzyme YjbQ -
  V5099_RS21175 (V5099_21175) aphA 4292158..4292871 (-) 714 WP_001226928.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=848361 V5099_RS21155 WP_000168305.1 4287628..4288164(-) (ssb) [Escherichia coli strain SCPM-O-B-12142]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=848361 V5099_RS21155 WP_000168305.1 4287628..4288164(-) (ssb) [Escherichia coli strain SCPM-O-B-12142]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489