Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NK8_RS01325 Genome accession   NZ_AP024322
Coordinates   267496..268038 (+) Length   180 a.a.
NCBI ID   WP_213226905.1    Uniprot ID   -
Organism   Caballeronia sp. NK8     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 262496..273038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NK8_RS01315 (NK8_02590) uvrA 262991..265864 (-) 2874 WP_213226901.1 excinuclease ABC subunit UvrA -
  NK8_RS01320 (NK8_02600) - 266175..267377 (+) 1203 WP_213226903.1 MFS transporter -
  NK8_RS01325 (NK8_02610) ssb 267496..268038 (+) 543 WP_213226905.1 single-stranded DNA-binding protein Machinery gene
  NK8_RS01330 (NK8_02620) arsH 268120..268842 (-) 723 WP_213226907.1 arsenical resistance protein ArsH -
  NK8_RS01335 (NK8_02630) arsB 268858..269919 (-) 1062 WP_213226910.1 ACR3 family arsenite efflux transporter -
  NK8_RS01340 (NK8_02640) - 269961..270293 (-) 333 WP_213226912.1 helix-turn-helix transcriptional regulator -
  NK8_RS01345 (NK8_02650) - 270748..271494 (+) 747 WP_225936185.1 response regulator transcription factor -
  NK8_RS01350 (NK8_02660) - 271612..272292 (+) 681 WP_213226914.1 response regulator transcription factor -
  NK8_RS01355 (NK8_02670) - 272378..273028 (+) 651 WP_213226916.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 18522.34 Da        Isoelectric Point: 5.9603

>NTDB_id=84795 NK8_RS01325 WP_213226905.1 267496..268038(+) (ssb) [Caballeronia sp. NK8]
MASVNKVILVGNLGADPETRYLPSGDAVANIRLATTDRYKDKGSGEFKELTEWHRVAFFGRLAEIVNEYLKKGSSVYIEG
RIRTRKWTDQSGQERYSTEIVADQMQMLGGRGGAGAGGDDGGYSRSAPMERSGGGGGGGGRAPAGGRPSGGGAGGAGGGS
SRPSAPAGGGFDDMDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=84795 NK8_RS01325 WP_213226905.1 267496..268038(+) (ssb) [Caballeronia sp. NK8]
ATGGCATCAGTCAACAAGGTCATTCTCGTGGGCAATCTGGGCGCCGACCCGGAAACCCGCTATCTCCCGAGCGGCGACGC
CGTGGCCAATATCCGTCTCGCGACGACGGACCGCTACAAGGACAAAGGCTCCGGCGAATTCAAGGAACTCACGGAGTGGC
ATCGTGTGGCGTTCTTCGGCCGGCTCGCCGAGATCGTCAACGAGTATTTGAAGAAAGGCTCGTCGGTGTATATCGAAGGG
CGCATCCGTACGCGCAAATGGACCGATCAGTCGGGCCAGGAGCGTTACTCGACCGAAATCGTCGCCGATCAGATGCAGAT
GCTCGGCGGCCGCGGCGGCGCGGGCGCTGGCGGCGATGACGGCGGCTACAGCCGCAGCGCACCGATGGAGCGCTCCGGCG
GCGGCGGTGGTGGTGGCGGCCGGGCCCCTGCCGGCGGACGCCCGAGCGGCGGCGGCGCTGGTGGCGCGGGTGGCGGTTCG
AGCCGCCCGAGCGCGCCGGCGGGCGGCGGCTTCGACGACATGGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50

100

0.517
  ssb Glaesserella parasuis strain SC1401

47.514

100

0.478
  ssb Neisseria gonorrhoeae MS11

43.575

99.444

0.433
  ssb Neisseria meningitidis MC58

43.017

99.444

0.428

Multiple sequence alignment