Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   QTN48_RS00100 Genome accession   NZ_CP128503
Coordinates   18943..19461 (+) Length   172 a.a.
NCBI ID   WP_004392979.1    Uniprot ID   A0A9Q3LJE1
Organism   Bacillus velezensis strain SRCM123422     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 13943..24461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QTN48_RS00080 (QTN48_00080) - 15021..15227 (+) 207 WP_004392973.1 DUF951 domain-containing protein -
  QTN48_RS00085 (QTN48_00085) - 15274..17277 (+) 2004 WP_017418437.1 molybdopterin-dependent oxidoreductase -
  QTN48_RS00090 (QTN48_00090) ychF 17404..18504 (+) 1101 WP_004392975.1 redox-regulated ATPase YchF -
  QTN48_RS00095 (QTN48_00095) rpsF 18616..18903 (+) 288 WP_004392977.1 30S ribosomal protein S6 -
  QTN48_RS00100 (QTN48_00100) ssbA 18943..19461 (+) 519 WP_004392979.1 single-stranded DNA-binding protein SsbA Machinery gene
  QTN48_RS00105 (QTN48_00105) rpsR 19505..19744 (+) 240 WP_004392983.1 30S ribosomal protein S18 -
  QTN48_RS00110 (QTN48_00110) - 19935..20516 (+) 582 WP_017418438.1 bifunctional transcriptional activator/DNA repair enzyme AdaA -
  QTN48_RS00115 (QTN48_00115) - 20513..21070 (+) 558 WP_017418439.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  QTN48_RS00120 (QTN48_00120) - 21109..21315 (+) 207 WP_228842265.1 endonuclease/exonuclease/phosphatase family protein -
  QTN48_RS00125 (QTN48_00125) - 21303..21449 (-) 147 Protein_24 exodeoxyribonuclease III -
  QTN48_RS00130 (QTN48_00130) - 21397..21633 (+) 237 WP_014722092.1 endonuclease/exonuclease/phosphatase family protein -
  QTN48_RS00135 (QTN48_00135) - 21696..22634 (+) 939 WP_017418441.1 LacI family DNA-binding transcriptional regulator -
  QTN48_RS00140 (QTN48_00140) - 22691..23071 (+) 381 WP_017418442.1 VOC family protein -
  QTN48_RS00145 (QTN48_00145) - 23105..24436 (-) 1332 WP_014419380.1 MFS transporter -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18745.31 Da        Isoelectric Point: 4.7621

>NTDB_id=847888 QTN48_RS00100 WP_004392979.1 18943..19461(+) (ssbA) [Bacillus velezensis strain SRCM123422]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNSGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=847888 QTN48_RS00100 WP_004392979.1 18943..19461(+) (ssbA) [Bacillus velezensis strain SRCM123422]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAGCGGTGCGGCTGTCGC
CACGTTTACTCTTGCTGTGAATCGTACATTCACGAACCAGTCCGGAGAACGTGAAGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTTCTTAAAAAAGGAAGCCTTGCCGGCGTAGACGGCCGACTCCAGACAAGA
AATTATGAAAACCAGCAGGGACAGCGTGTCTTCGTGACAGAAGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAAAA
CAGCGGCGGTTCTGGATCAGGCGGATACAACGAAGGAAACAGCGGCGGAGGCCAATACTTTGGCGGAGGCCAAAATGATA
ATCCGTTCGGCGGAAATCAGAACAACCAGAGACGAAATCAAGGGAACAGCTTTAATGATGATCCATTTGCCAACGACGGC
AAGCCGATTGACATCTCGGATGATGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

98.837

100

0.988
  ssb Latilactobacillus sakei subsp. sakei 23K

58.757

100

0.605
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378