Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   QQA12_RS12615 Genome accession   NZ_CP128405
Coordinates   2796453..2797511 (-) Length   352 a.a.
NCBI ID   WP_054668759.1    Uniprot ID   -
Organism   Stenotrophomonas sp. 17(2023)     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2791453..2802511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQA12_RS12595 - 2792664..2794562 (-) 1899 WP_226049482.1 type IV pilus secretin PilQ family protein -
  QQA12_RS12600 - 2794584..2795120 (-) 537 WP_054667353.1 pilus assembly protein PilP -
  QQA12_RS12605 pilO 2795120..2795797 (-) 678 WP_226049483.1 type 4a pilus biogenesis protein PilO -
  QQA12_RS12610 - 2795893..2796453 (-) 561 Protein_2453 PilN domain-containing protein -
  QQA12_RS12615 pilM 2796453..2797511 (-) 1059 WP_054668759.1 pilus assembly protein PilM Machinery gene
  QQA12_RS12620 - 2797729..2800161 (+) 2433 WP_226049484.1 penicillin-binding protein 1A -
  QQA12_RS12625 - 2800240..2800866 (+) 627 WP_056931182.1 hypothetical protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37395.95 Da        Isoelectric Point: 4.4316

>NTDB_id=847284 QQA12_RS12615 WP_054668759.1 2796453..2797511(-) (pilM) [Stenotrophomonas sp. 17(2023)]
MGLIPKSQPPIIGVDISSTAVKLLQLARSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAVARSGTRAKGAAAA
VAGSAVITKVIPMPADLDEADLEAQVELEAVNYIPYPIEEVSLDFEVLGPVPNNPEMVQVLLAASRSENVELRQSALELG
GLVAKVMDVEAFAIENAFALVASELPVASDGVVALVDIGATMTTLNVLRGGRSLYSREQVFGGKQLTDEVMRRYGLSYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQIGRLLQFFYAGSEFNRVDHIVLAGGCASLPGLPVMVEEQLGVSTSVANPLA
QMTLGQKVQAHALAQDAPALMIATGLALRGFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=847284 QQA12_RS12615 WP_054668759.1 2796453..2797511(-) (pilM) [Stenotrophomonas sp. 17(2023)]
GTGGGGCTTATCCCAAAGAGTCAACCACCGATCATCGGTGTTGACATCAGCTCGACTGCGGTAAAGCTGCTTCAGCTTGC
CCGCAGCGGCAATCGTTTTCGCGTGGAACATTACGCCGTGGAACCACTTCCGCCGAATGCGGTGGTGGAGAAGAACATCG
TCGAGGTCGAGGCGGTCGGCGAGGCCATACGCCGGGCCGTGGCGCGCTCGGGAACCCGGGCCAAGGGGGCGGCTGCCGCG
GTCGCCGGTTCGGCGGTGATCACCAAGGTGATCCCGATGCCGGCCGACCTGGACGAGGCCGACCTGGAAGCCCAGGTCGA
GCTGGAGGCGGTGAACTACATCCCGTATCCGATCGAGGAAGTGAGCCTGGACTTCGAGGTGCTCGGGCCGGTGCCCAACA
ACCCGGAAATGGTCCAGGTGCTGTTGGCGGCCTCGCGTTCGGAGAACGTCGAACTGCGCCAGTCGGCGCTGGAGCTGGGC
GGGCTGGTGGCCAAGGTCATGGACGTGGAAGCGTTCGCGATCGAGAACGCCTTCGCGCTGGTGGCCAGCGAACTGCCGGT
GGCCAGTGACGGCGTGGTCGCGCTGGTGGACATCGGCGCCACCATGACCACGCTCAACGTCCTGCGTGGCGGGCGCAGCC
TGTACAGCCGCGAACAGGTGTTCGGCGGCAAGCAGCTCACCGACGAGGTGATGCGCCGCTACGGGCTGAGCTACGAGGAA
GCCGGGCTGGCCAAGCGCCAGGGCGGGCTGCCGGAGAGCTACGAGGTGGAAGTGCTGGAGCCGTTCAAGGAGGCCACGGT
CCAGCAGATCGGCCGCCTGTTGCAGTTCTTCTATGCCGGCAGCGAGTTCAATCGCGTCGATCACATCGTGCTGGCCGGTG
GCTGCGCTTCGCTGCCCGGGCTGCCGGTGATGGTCGAGGAACAACTGGGGGTGAGCACGTCGGTGGCCAATCCGCTGGCG
CAGATGACGCTGGGACAGAAGGTGCAGGCGCATGCGCTGGCCCAGGATGCCCCGGCGCTGATGATCGCCACCGGCCTGGC
CCTGCGGGGGTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

50

100

0.5
  comM Acinetobacter nosocomialis M2

50

100

0.5
  comM Acinetobacter baylyi ADP1

50.292

97.159

0.489
  pilM Legionella pneumophila strain ERS1305867

46.571

99.432

0.463