Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   V2H88_RS02885 Genome accession   NZ_CP144351
Coordinates   612444..613616 (+) Length   390 a.a.
NCBI ID   WP_004916965.1    Uniprot ID   -
Organism   Riemerella anatipestifer strain RA-3M     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 607444..618616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V2H88_RS02855 (V2H88_02855) folK 608205..608654 (-) 450 WP_004916980.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  V2H88_RS02860 (V2H88_02860) sppA 608676..610430 (+) 1755 WP_004916979.1 signal peptide peptidase SppA -
  V2H88_RS02865 (V2H88_02865) dtd 610515..610961 (-) 447 WP_004916976.1 D-aminoacyl-tRNA deacylase -
  V2H88_RS02870 (V2H88_02870) - 610967..611431 (-) 465 WP_004916974.1 hypothetical protein -
  V2H88_RS02875 (V2H88_02875) greA 611534..612001 (+) 468 WP_004916971.1 transcription elongation factor GreA -
  V2H88_RS02880 (V2H88_02880) - 612020..612406 (+) 387 WP_004916969.1 HIT family protein -
  V2H88_RS02885 (V2H88_02885) clpX 612444..613616 (+) 1173 WP_004916965.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  V2H88_RS02890 (V2H88_02890) - 613700..614065 (+) 366 WP_004916962.1 hypothetical protein -
  V2H88_RS02895 (V2H88_02895) - 614113..615654 (+) 1542 WP_004916959.1 T9SS type A sorting domain-containing protein -
  V2H88_RS02900 (V2H88_02900) - 615666..615917 (+) 252 WP_004916956.1 hypothetical protein -
  V2H88_RS02905 (V2H88_02905) - 615979..617250 (+) 1272 WP_228481888.1 peroxiredoxin family protein -

Sequence

Protein


Download         Length: 390 a.a.        Molecular weight: 43885.55 Da        Isoelectric Point: 6.2755

>NTDB_id=846980 V2H88_RS02885 WP_004916965.1 612444..613616(+) (clpX) [Riemerella anatipestifer strain RA-3M]
MNNNQCSFCGRHRKEVQMLVSGQNGLICEHCIEQAHAFVKDNIQKEEFSPISTLSELKKPREIKKTLDEYVIGQDQAKKQ
LSIAVYNHYKRLLHSSTKKDNDVEIEKSNIIMIGETGTGKTLLAKTIARELNVPFCIVDATILTEAGYVGEDVESILSRL
LMVADYDVEKAEKGIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGSIVNVPPQGGRKHPDQKYIQVNTQNILF
IAGGAFDGIKEIIERRLNKQAIGFSKEKLDSEKDLAQILPQVNSTDLRKFGLIPELLGRFPVITYLDQLTKKTMVRIMKE
PKNSIVNQFKALFKIDGIDLEFTDEALEKIVDETFEKGLGARGLRGTTEKVLEDYMFDIDIISKNKITIN

Nucleotide


Download         Length: 1173 bp        

>NTDB_id=846980 V2H88_RS02885 WP_004916965.1 612444..613616(+) (clpX) [Riemerella anatipestifer strain RA-3M]
ATGAATAATAACCAGTGTTCTTTTTGCGGAAGACATCGTAAAGAAGTTCAAATGTTAGTTTCGGGACAAAACGGACTTAT
CTGCGAACATTGTATAGAACAAGCTCACGCATTTGTTAAAGACAATATTCAGAAAGAAGAATTCTCTCCTATAAGTACCC
TCTCCGAACTAAAGAAACCTAGAGAAATTAAAAAAACTCTAGACGAATATGTCATCGGACAAGACCAAGCTAAAAAACAA
CTTTCCATCGCAGTCTATAACCATTATAAAAGACTTCTTCACTCTTCAACAAAAAAAGACAATGATGTTGAAATAGAAAA
ATCTAACATCATTATGATAGGTGAAACAGGCACAGGAAAAACCCTTTTAGCGAAAACCATTGCAAGAGAACTTAATGTCC
CTTTTTGTATTGTAGACGCTACTATACTTACCGAAGCTGGTTATGTAGGCGAAGATGTAGAGAGTATTTTATCTAGACTT
CTTATGGTCGCTGATTACGATGTAGAGAAAGCCGAAAAAGGCATTGTATTCATAGATGAAATAGATAAAATAGCGAGAAA
ATCAGATAATCCAAGCATCACAAGAGATGTATCAGGAGAAGGTGTACAACAAGGATTATTAAAGTTATTGGAAGGAAGCA
TTGTAAATGTACCGCCTCAAGGAGGAAGAAAACACCCTGACCAAAAATACATACAAGTAAACACACAAAATATCCTATTC
ATTGCTGGAGGGGCTTTTGATGGTATAAAAGAAATTATAGAAAGGAGACTAAACAAACAAGCCATAGGCTTTAGTAAAGA
AAAACTAGATTCCGAAAAAGATTTGGCACAGATATTGCCACAAGTAAACTCAACGGATTTGAGAAAGTTCGGATTAATTC
CAGAACTTTTAGGTAGATTCCCTGTAATTACTTATTTAGACCAACTAACCAAAAAGACCATGGTAAGAATAATGAAAGAG
CCAAAAAACTCTATTGTTAATCAATTCAAAGCTCTTTTCAAAATAGACGGTATAGATTTAGAGTTCACAGACGAAGCCTT
AGAGAAAATTGTAGATGAAACTTTTGAAAAAGGATTAGGTGCAAGAGGACTTAGAGGCACTACAGAAAAGGTTTTAGAAG
ATTACATGTTTGATATAGATATAATATCCAAGAATAAAATTACAATAAATTAA

Domains

Predicted by InterProScan.

ClpX C4-type zinc finger (zf-C4_ClpX)

(5-40)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(309-378)

AAA domain (Cdc48 subfamily) (AAA_2)

(106-303)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

52.785

96.667

0.51
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

51.715

97.179

0.503