Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   QQM35_RS03595 Genome accession   NZ_CP128355
Coordinates   727831..728346 (+) Length   171 a.a.
NCBI ID   WP_251521359.1    Uniprot ID   -
Organism   Staphylococcus hsinchuensis strain H164     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 722831..733346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQM35_RS03565 (QQM35_03555) - 723472..723840 (+) 369 WP_251521383.1 DUF2294 domain-containing protein -
  QQM35_RS03570 (QQM35_03560) - 724016..724894 (+) 879 WP_251521380.1 mechanosensitive ion channel family protein -
  QQM35_RS03575 (QQM35_03565) - 724921..725136 (+) 216 WP_251521925.1 DUF951 domain-containing protein -
  QQM35_RS03580 (QQM35_03570) ychF 725137..726234 (+) 1098 WP_251521377.1 redox-regulated ATPase YchF -
  QQM35_RS03585 (QQM35_03575) - 726296..727084 (-) 789 WP_251521364.1 GH25 family lysozyme -
  QQM35_RS03590 (QQM35_03580) rpsF 727507..727812 (+) 306 WP_251521361.1 30S ribosomal protein S6 -
  QQM35_RS03595 (QQM35_03585) ssbA 727831..728346 (+) 516 WP_251521359.1 single-stranded DNA-binding protein Machinery gene
  QQM35_RS03600 (QQM35_03590) rpsR 728469..728711 (+) 243 WP_251521358.1 30S ribosomal protein S18 -
  QQM35_RS03605 (QQM35_03595) - 728947..729123 (+) 177 WP_285813500.1 VraH family protein -
  QQM35_RS03610 (QQM35_03600) - 729403..730539 (+) 1137 WP_251521356.1 hypothetical protein -
  QQM35_RS03615 (QQM35_03605) - 730636..731421 (-) 786 WP_251521354.1 poly-gamma-glutamate hydrolase family protein -
  QQM35_RS03620 (QQM35_03610) - 731626..731802 (-) 177 WP_251521352.1 hypothetical protein -
  QQM35_RS03625 (QQM35_03615) - 731960..732190 (-) 231 WP_251521350.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19050.61 Da        Isoelectric Point: 4.7278

>NTDB_id=846980 QQM35_RS03595 WP_251521359.1 727831..728346(+) (ssbA) [Staphylococcus hsinchuensis strain H164]
MINRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQAENVNNYLFKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNQNQRHSQDGNNNFQDFGQGFGGQQSGQNASYQNNNNSSNQNNQSDNPFANANG
PIDISDDDLPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=846980 QQM35_RS03595 WP_251521359.1 727831..728346(+) (ssbA) [Staphylococcus hsinchuensis strain H164]
ATGATAAATAGAGTTGTTTTAGTCGGTCGTTTAACAAAGGATCCAGAATATAGAACAACACCCTCAGGCGTGAGTGTTGC
GACTTTTACCCTTGCGGTAAATCGTACGTTTACAAATGCGCAAGGGGAACGCGAAGCTGATTTCATTAACTGTGTCGTTT
TTAGAAAGCAAGCAGAAAATGTAAATAACTATTTATTCAAAGGTAGTTTAGCAGGCGTCGATGGTCGCATCCAATCACGT
AGTTATGAAAATCAAGAAGGTCGTCGTATTTTTGTCACTGAAGTTGTTTGTGATAGTGTTCAATTCCTTGAACCTAAAAA
TCAAAACCAACGCCATTCACAAGATGGAAACAACAATTTCCAAGACTTTGGACAAGGCTTTGGCGGACAACAATCAGGTC
AAAATGCTTCTTATCAAAACAATAACAATTCATCTAACCAAAATAATCAATCAGACAACCCATTTGCGAATGCAAACGGT
CCGATTGATATTAGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

60.894

100

0.637
  ssb Latilactobacillus sakei subsp. sakei 23K

56.14

100

0.561
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.091

64.327

0.38
  ssb Glaesserella parasuis strain SC1401

32.979

100

0.363