Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   N7E01_RS09610 Genome accession   NZ_CP128233
Coordinates   1740866..1741354 (-) Length   162 a.a.
NCBI ID   WP_289172731.1    Uniprot ID   -
Organism   Neopusillimonas aromaticivorans strain CC-YST667     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1735866..1746354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7E01_RS09585 (N7E01_09585) - 1736214..1737623 (+) 1410 WP_289172726.1 NAD(P)-binding protein -
  N7E01_RS09590 (N7E01_09590) - 1737959..1738162 (+) 204 WP_289172727.1 hypothetical protein -
  N7E01_RS09595 (N7E01_09595) - 1738303..1738914 (+) 612 WP_289172728.1 tRNA-uridine aminocarboxypropyltransferase -
  N7E01_RS18800 - 1738905..1738973 (-) 69 WP_350495029.1 helix-turn-helix domain-containing protein -
  N7E01_RS09600 (N7E01_09600) - 1739212..1740231 (+) 1020 WP_289172729.1 ATP-binding protein -
  N7E01_RS09605 (N7E01_09605) - 1740228..1740740 (+) 513 WP_289172730.1 hypothetical protein -
  N7E01_RS09610 (N7E01_09610) ssb 1740866..1741354 (-) 489 WP_289172731.1 single-stranded DNA-binding protein Machinery gene
  N7E01_RS09615 (N7E01_09615) - 1741505..1742710 (-) 1206 Protein_1929 MFS transporter -
  N7E01_RS09620 (N7E01_09620) uvrA 1742787..1745631 (+) 2845 Protein_1930 excinuclease ABC subunit UvrA -
  N7E01_RS09625 (N7E01_09625) - 1745637..1746136 (+) 500 Protein_1931 SET domain-containing protein-lysine N-methyltransferase -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 17804.85 Da        Isoelectric Point: 5.3320

>NTDB_id=846878 N7E01_RS09610 WP_289172731.1 1740866..1741354(-) (ssb) [Neopusillimonas aromaticivorans strain CC-YST667]
MASVNKVILVGNLGRDPEVRYSPDGVAICNVSIATTSQWKDRNSGEKREETEWHRVVFYNRLAEIAGEYLKKGRSVYVEG
RIKTRKYQDKDTGADRYSTEIVAEQMQMLGGRDGGGMDMGGGADFGQDAPAPRQQRPSQPRPAAPQAAPAANLADMDDDI
PF

Nucleotide


Download         Length: 489 bp        

>NTDB_id=846878 N7E01_RS09610 WP_289172731.1 1740866..1741354(-) (ssb) [Neopusillimonas aromaticivorans strain CC-YST667]
ATGGCTTCAGTTAACAAAGTGATTCTGGTGGGCAACCTGGGGCGTGACCCCGAAGTGCGGTACAGCCCCGACGGCGTGGC
CATCTGCAATGTGTCCATCGCCACCACATCGCAATGGAAAGACCGCAACAGCGGCGAAAAACGCGAAGAAACCGAATGGC
ACCGCGTGGTGTTCTACAACCGCCTGGCTGAAATCGCCGGCGAATACCTGAAAAAAGGGCGTTCGGTTTATGTCGAGGGT
CGTATCAAAACCCGCAAATACCAAGACAAAGACACCGGCGCAGACCGCTACAGCACCGAAATCGTTGCCGAACAAATGCA
AATGCTGGGTGGCCGTGATGGTGGCGGCATGGACATGGGCGGCGGCGCTGACTTCGGCCAGGACGCCCCTGCACCCCGCC
AGCAACGCCCCAGCCAGCCGCGTCCGGCCGCGCCACAGGCCGCACCGGCCGCCAACCTGGCCGACATGGACGACGACATC
CCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.124

100

0.562
  ssb Neisseria meningitidis MC58

52

100

0.562
  ssb Neisseria gonorrhoeae MS11

52

100

0.562
  ssb Glaesserella parasuis strain SC1401

47.568

100

0.543