Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | N7E01_RS05215 | Genome accession | NZ_CP128233 |
| Coordinates | 988675..989133 (-) | Length | 152 a.a. |
| NCBI ID | WP_289174852.1 | Uniprot ID | - |
| Organism | Neopusillimonas aromaticivorans strain CC-YST667 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 955353..1015847 | 988675..989133 | within | 0 |
Gene organization within MGE regions
Location: 955353..1015847
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N7E01_RS05030 (N7E01_05030) | - | 955410..956666 (+) | 1257 | WP_289174832.1 | integrase arm-type DNA-binding domain-containing protein | - |
| N7E01_RS05035 (N7E01_05035) | - | 956727..957038 (+) | 312 | WP_128355399.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| N7E01_RS05040 (N7E01_05040) | nadS | 957040..957327 (+) | 288 | WP_128355400.1 | NadS family protein | - |
| N7E01_RS05045 (N7E01_05045) | - | 957403..957693 (+) | 291 | WP_128355401.1 | hypothetical protein | - |
| N7E01_RS05050 (N7E01_05050) | - | 957745..958416 (+) | 672 | WP_128355402.1 | TrbM/KikA/MpfK family conjugal transfer protein | - |
| N7E01_RS05055 (N7E01_05055) | - | 958427..959092 (+) | 666 | WP_128355403.1 | lytic transglycosylase domain-containing protein | - |
| N7E01_RS05060 (N7E01_05060) | - | 959175..959495 (+) | 321 | WP_128355404.1 | TrbC/VirB2 family protein | - |
| N7E01_RS05065 (N7E01_05065) | - | 959499..959927 (+) | 429 | WP_289174833.1 | VirB3 family type IV secretion system protein | - |
| N7E01_RS05070 (N7E01_05070) | - | 959830..961476 (+) | 1647 | WP_228255706.1 | hypothetical protein | - |
| N7E01_RS05075 (N7E01_05075) | - | 961383..962273 (+) | 891 | WP_289174834.1 | hypothetical protein | - |
| N7E01_RS05080 (N7E01_05080) | - | 962283..962828 (+) | 546 | WP_128355406.1 | hypothetical protein | - |
| N7E01_RS05085 (N7E01_05085) | - | 963022..963402 (+) | 381 | WP_128355407.1 | hypothetical protein | - |
| N7E01_RS05090 (N7E01_05090) | - | 963772..964473 (-) | 702 | WP_289174835.1 | hypothetical protein | - |
| N7E01_RS05095 (N7E01_05095) | - | 964908..965612 (+) | 705 | WP_128355409.1 | type IV secretion system protein | - |
| N7E01_RS05100 (N7E01_05100) | - | 965687..966574 (+) | 888 | WP_289174836.1 | type IV secretion system protein | - |
| N7E01_RS05105 (N7E01_05105) | - | 966651..966788 (+) | 138 | WP_026483152.1 | hypothetical protein | - |
| N7E01_RS05110 (N7E01_05110) | - | 966792..967478 (+) | 687 | WP_128355411.1 | type IV secretion system protein | - |
| N7E01_RS05115 (N7E01_05115) | virB9 | 967509..968303 (+) | 795 | WP_289174837.1 | P-type conjugative transfer protein VirB9 | - |
| N7E01_RS05120 (N7E01_05120) | - | 968368..968529 (+) | 162 | WP_289174838.1 | hypothetical protein | - |
| N7E01_RS05125 (N7E01_05125) | virB11 | 968733..970472 (+) | 1740 | WP_289174839.1 | P-type DNA transfer ATPase VirB11 | - |
| N7E01_RS05130 (N7E01_05130) | - | 970602..971519 (+) | 918 | WP_128355415.1 | TrfA | - |
| N7E01_RS05135 (N7E01_05135) | - | 971969..972427 (+) | 459 | WP_128355416.1 | hypothetical protein | - |
| N7E01_RS05140 (N7E01_05140) | stbB | 972912..973619 (+) | 708 | WP_128355418.1 | StbB family protein | - |
| N7E01_RS05145 (N7E01_05145) | - | 973626..974060 (+) | 435 | WP_128355419.1 | hypothetical protein | - |
| N7E01_RS05150 (N7E01_05150) | - | 974066..975217 (+) | 1152 | WP_289174840.1 | type IV secretion system DNA-binding domain-containing protein | - |
| N7E01_RS05155 (N7E01_05155) | - | 975177..975683 (+) | 507 | WP_289174841.1 | type IV secretion system DNA-binding domain-containing protein | - |
| N7E01_RS05160 (N7E01_05160) | - | 975978..976700 (-) | 723 | WP_289174842.1 | AAA family ATPase | - |
| N7E01_RS05165 (N7E01_05165) | - | 976697..978292 (-) | 1596 | WP_289174843.1 | hypothetical protein | - |
| N7E01_RS05170 (N7E01_05170) | - | 978579..978803 (-) | 225 | WP_289174844.1 | transcriptional regulator | - |
| N7E01_RS05175 (N7E01_05175) | - | 978855..979067 (-) | 213 | WP_289174845.1 | hypothetical protein | - |
| N7E01_RS05180 (N7E01_05180) | - | 979064..981454 (-) | 2391 | WP_289174846.1 | DEAD/DEAH box helicase family protein | - |
| N7E01_RS05185 (N7E01_05185) | - | 981458..982465 (-) | 1008 | WP_289174847.1 | DNA methyltransferase | - |
| N7E01_RS05190 (N7E01_05190) | - | 982776..983582 (-) | 807 | WP_289174848.1 | DNA methyltransferase | - |
| N7E01_RS05195 (N7E01_05195) | - | 983612..984184 (-) | 573 | WP_113934837.1 | recombinase family protein | - |
| N7E01_RS05200 (N7E01_05200) | mobF | 984435..985826 (+) | 1392 | WP_289174849.1 | MobF family relaxase | - |
| N7E01_RS05205 (N7E01_05205) | - | 985744..987333 (+) | 1590 | WP_289174850.1 | AAA family ATPase | - |
| N7E01_RS05210 (N7E01_05210) | - | 987884..988558 (+) | 675 | WP_289174851.1 | SOS response-associated peptidase family protein | - |
| N7E01_RS05215 (N7E01_05215) | ssb | 988675..989133 (-) | 459 | WP_289174852.1 | single-stranded DNA-binding protein | Machinery gene |
| N7E01_RS05220 (N7E01_05220) | - | 989201..990010 (-) | 810 | WP_289174853.1 | DUF3560 domain-containing protein | - |
| N7E01_RS05225 (N7E01_05225) | - | 991141..992439 (+) | 1299 | WP_289174854.1 | reverse transcriptase domain-containing protein | - |
| N7E01_RS05230 (N7E01_05230) | - | 992496..993023 (-) | 528 | WP_289174855.1 | JAB domain-containing protein | - |
| N7E01_RS05235 (N7E01_05235) | - | 993440..994480 (-) | 1041 | WP_289174856.1 | Y-family DNA polymerase | - |
| N7E01_RS05240 (N7E01_05240) | intI1 | 994697..995711 (-) | 1015 | Protein_1031 | class 1 integron integrase IntI1 | - |
| N7E01_RS05245 (N7E01_05245) | dfrA12 | 995856..996353 (+) | 498 | WP_001083725.1 | trimethoprim-resistant dihydrofolate reductase DfrA12 | - |
| N7E01_RS05250 (N7E01_05250) | - | 996505..996753 (+) | 249 | WP_224450643.1 | DUF1010 domain-containing protein | - |
| N7E01_RS05255 (N7E01_05255) | - | 996759..997597 (+) | 839 | Protein_1034 | AadA family aminoglycoside 3''-O-nucleotidyltransferase | - |
| N7E01_RS05265 (N7E01_05265) | - | 997783..998477 (+) | 695 | Protein_1035 | alpha/beta fold hydrolase | - |
| N7E01_RS05270 (N7E01_05270) | - | 998616..999134 (+) | 519 | WP_151283906.1 | AacA4 family aminoglycoside N(6')-acetyltransferase | - |
| N7E01_RS05275 (N7E01_05275) | - | 999203..1000003 (+) | 801 | WP_032491804.1 | OXA-10 family extended-spectrum class D beta-lactamase OXA-17 | - |
| N7E01_RS05280 (N7E01_05280) | - | 1000123..1000260 (+) | 138 | WP_226955427.1 | hypothetical protein | - |
| N7E01_RS05285 (N7E01_05285) | - | 1000270..1001329 (-) | 1060 | Protein_1039 | IS110-like element ISPa25 family transposase | - |
| N7E01_RS05290 (N7E01_05290) | - | 1001521..1001868 (+) | 348 | WP_000679427.1 | quaternary ammonium compound efflux SMR transporter QacE delta 1 | - |
| N7E01_RS05295 (N7E01_05295) | folP | 1001862..1002791 (+) | 930 | WP_289174857.1 | dihydropteroate synthase | - |
| N7E01_RS05300 (N7E01_05300) | floR | 1002974..1004187 (+) | 1214 | Protein_1042 | chloramphenicol/florfenicol efflux MFS transporter FloR | - |
| N7E01_RS18450 | - | 1004215..1004295 (+) | 81 | Protein_1043 | LysR family transcriptional regulator | - |
| N7E01_RS05305 (N7E01_05305) | - | 1004281..1004397 (+) | 117 | Protein_1044 | DUF3363 domain-containing protein | - |
| N7E01_RS05310 (N7E01_05310) | tetR(G) | 1004394..1005020 (-) | 627 | WP_000163574.1 | tetracycline resistance transcriptional repressor TetR(G) | - |
| N7E01_RS05315 (N7E01_05315) | tet(G) | 1005124..1006298 (+) | 1175 | Protein_1046 | tetracycline efflux MFS transporter Tet(G) | - |
| N7E01_RS05320 (N7E01_05320) | - | 1006391..1007110 (+) | 720 | WP_023139374.1 | LysR family transcriptional regulator | - |
| N7E01_RS05325 (N7E01_05325) | - | 1007202..1008686 (-) | 1485 | WP_022742855.1 | IS91 family transposase | - |
| N7E01_RS05330 (N7E01_05330) | - | 1008961..1009311 (-) | 351 | Protein_1049 | TCP-1/cpn60 chaperonin family protein | - |
| N7E01_RS05335 (N7E01_05335) | intI1 | 1009315..1009614 (-) | 300 | Protein_1050 | class 1 integron integrase IntI1 | - |
| N7E01_RS05340 (N7E01_05340) | aac(6')-Ib | 1009774..1010328 (+) | 555 | WP_012695458.1 | AAC(6')-Ib family aminoglycoside 6'-N-acetyltransferase | - |
| N7E01_RS05345 (N7E01_05345) | - | 1010503..1010835 (+) | 333 | WP_032492097.1 | quaternary ammonium compound efflux SMR transporter QacF | - |
| N7E01_RS05350 (N7E01_05350) | dfrA12 | 1010908..1011405 (+) | 498 | WP_001083725.1 | trimethoprim-resistant dihydrofolate reductase DfrA12 | - |
| N7E01_RS05355 (N7E01_05355) | - | 1011517..1011807 (+) | 291 | WP_001336345.1 | DUF1010 domain-containing protein | - |
| N7E01_RS05360 (N7E01_05360) | - | 1011813..1012651 (+) | 839 | Protein_1055 | AadA family aminoglycoside 3''-O-nucleotidyltransferase | - |
| N7E01_RS05365 (N7E01_05365) | - | 1012768..1013115 (+) | 348 | WP_000679427.1 | quaternary ammonium compound efflux SMR transporter QacE delta 1 | - |
| N7E01_RS05370 (N7E01_05370) | sul1 | 1013109..1013948 (+) | 840 | WP_000259031.1 | sulfonamide-resistant dihydropteroate synthase Sul1 | - |
| N7E01_RS05375 (N7E01_05375) | - | 1014075..1014575 (+) | 501 | Protein_1058 | GNAT family N-acetyltransferase | - |
| N7E01_RS05380 (N7E01_05380) | - | 1014636..1014887 (+) | 252 | WP_289174858.1 | hypothetical protein | - |
| N7E01_RS05390 (N7E01_05390) | - | 1015083..1015847 (+) | 765 | WP_001389365.1 | IS6-like element IS6100 family transposase | - |
Sequence
Protein
Download Length: 152 a.a. Molecular weight: 16600.65 Da Isoelectric Point: 8.8753
>NTDB_id=846877 N7E01_RS05215 WP_289174852.1 988675..989133(-) (ssb) [Neopusillimonas aromaticivorans strain CC-YST667]
MASLNRATLIGNLGKDPEVRYTAEGAAVCSASIATTHQWKDKATGERREETEWHRVVFYGRLAEVAGEYLRKGRTVFVEG
RLKTRKWQDADTGTDRYTTEIIADQMQLLGSPETAKAGTAQAVPVARPKGRNGKAKAPAAAPDEVEPSDIPF
MASLNRATLIGNLGKDPEVRYTAEGAAVCSASIATTHQWKDKATGERREETEWHRVVFYGRLAEVAGEYLRKGRTVFVEG
RLKTRKWQDADTGTDRYTTEIIADQMQLLGSPETAKAGTAQAVPVARPKGRNGKAKAPAAAPDEVEPSDIPF
Nucleotide
Download Length: 459 bp
>NTDB_id=846877 N7E01_RS05215 WP_289174852.1 988675..989133(-) (ssb) [Neopusillimonas aromaticivorans strain CC-YST667]
ATGGCATCATTGAACCGCGCTACTCTGATCGGCAACCTTGGCAAAGACCCCGAAGTCCGCTACACCGCAGAAGGTGCAGC
CGTCTGCTCAGCGTCGATTGCTACGACTCACCAATGGAAGGACAAGGCCACAGGCGAGCGCCGCGAAGAAACCGAATGGC
ACCGCGTCGTTTTCTATGGCCGACTGGCTGAAGTCGCCGGTGAGTATCTGCGAAAAGGCCGCACTGTGTTTGTGGAAGGC
CGACTGAAAACCCGCAAATGGCAGGATGCCGACACCGGCACAGACCGCTACACCACGGAAATCATTGCAGACCAAATGCA
GCTGTTGGGCAGCCCAGAGACGGCCAAGGCTGGTACTGCGCAGGCGGTGCCGGTAGCCCGCCCGAAAGGCCGCAACGGCA
AGGCGAAGGCACCCGCTGCAGCGCCTGATGAAGTCGAACCATCAGATATTCCATTCTGA
ATGGCATCATTGAACCGCGCTACTCTGATCGGCAACCTTGGCAAAGACCCCGAAGTCCGCTACACCGCAGAAGGTGCAGC
CGTCTGCTCAGCGTCGATTGCTACGACTCACCAATGGAAGGACAAGGCCACAGGCGAGCGCCGCGAAGAAACCGAATGGC
ACCGCGTCGTTTTCTATGGCCGACTGGCTGAAGTCGCCGGTGAGTATCTGCGAAAAGGCCGCACTGTGTTTGTGGAAGGC
CGACTGAAAACCCGCAAATGGCAGGATGCCGACACCGGCACAGACCGCTACACCACGGAAATCATTGCAGACCAAATGCA
GCTGTTGGGCAGCCCAGAGACGGCCAAGGCTGGTACTGCGCAGGCGGTGCCGGTAGCCCGCCCGAAAGGCCGCAACGGCA
AGGCGAAGGCACCCGCTGCAGCGCCTGATGAAGTCGAACCATCAGATATTCCATTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
47.191 |
100 |
0.553 |
| ssb | Glaesserella parasuis strain SC1401 |
60.36 |
73.026 |
0.441 |
| ssb | Neisseria gonorrhoeae MS11 |
50.926 |
71.053 |
0.362 |
| ssb | Neisseria meningitidis MC58 |
50.926 |
71.053 |
0.362 |