Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   QRA13_RS12400 Genome accession   NZ_CP128184
Coordinates   2558602..2559120 (+) Length   172 a.a.
NCBI ID   WP_007615071.1    Uniprot ID   -
Organism   Bacillus velezensis strain YJ0-1 isolate soil     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2553602..2564120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRA13_RS12380 (QRA13_12380) - 2554680..2554886 (+) 207 WP_004392973.1 DUF951 domain-containing protein -
  QRA13_RS12385 (QRA13_12385) - 2554933..2556936 (+) 2004 WP_224223954.1 molybdopterin-dependent oxidoreductase -
  QRA13_RS12390 (QRA13_12390) ychF 2557063..2558163 (+) 1101 WP_004392975.1 redox-regulated ATPase YchF -
  QRA13_RS12395 (QRA13_12395) rpsF 2558275..2558562 (+) 288 WP_004392977.1 30S ribosomal protein S6 -
  QRA13_RS12400 (QRA13_12400) ssbA 2558602..2559120 (+) 519 WP_007615071.1 single-stranded DNA-binding protein SsbA Machinery gene
  QRA13_RS12405 (QRA13_12405) rpsR 2559164..2559403 (+) 240 WP_029325793.1 30S ribosomal protein S18 -
  QRA13_RS12410 (QRA13_12410) - 2559591..2560172 (+) 582 WP_224223953.1 bifunctional transcriptional activator/DNA repair enzyme AdaA -
  QRA13_RS12415 (QRA13_12415) - 2560169..2560726 (+) 558 WP_224223952.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  QRA13_RS12420 (QRA13_12420) xth 2560723..2561481 (+) 759 WP_224223951.1 exodeoxyribonuclease III -
  QRA13_RS12425 (QRA13_12425) - 2561544..2562482 (+) 939 WP_224223950.1 LacI family DNA-binding transcriptional regulator -
  QRA13_RS12430 (QRA13_12430) - 2562539..2562919 (+) 381 WP_032875338.1 VOC family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18772.33 Da        Isoelectric Point: 4.7621

>NTDB_id=846512 QRA13_RS12400 WP_007615071.1 2558602..2559120(+) (ssbA) [Bacillus velezensis strain YJ0-1 isolate soil]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNNGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=846512 QRA13_RS12400 WP_007615071.1 2558602..2559120(+) (ssbA) [Bacillus velezensis strain YJ0-1 isolate soil]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAGCGGTGCGGCTGTCGC
CACGTTTACTCTTGCTGTGAATCGTACATTCACGAACCAGTCCGGAGAACGTGAAGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTTCTTAAAAAAGGAAGCCTTGCCGGCGTAGACGGCCGACTCCAGACAAGA
AATTATGAAAACCAGCAGGGACAGCGTGTCTTCGTGACAGAAGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAAAA
CAACGGCGGTTCTGGATCAGGCGGATACAACGAAGGAAACAGCGGCGGAGGCCAATACTTTGGCGGAGGCCAAAATGATA
ATCCGTTCGGCGGAAATCAGAACAACCAGAGACGAAATCAAGGGAACAGCTTTAATGATGATCCATTTGCCAACGACGGC
AAGCCGATTGACATCTCGGATGATGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

98.837

100

0.988
  ssb Latilactobacillus sakei subsp. sakei 23K

58.757

100

0.605
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

34.973

100

0.372