Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   QRD89_RS19075 Genome accession   NZ_CP128168
Coordinates   3653546..3654034 (-) Length   162 a.a.
NCBI ID   WP_008636605.1    Uniprot ID   A0A7Z2STB9
Organism   Halobacillus sp. ACCC02827     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3648546..3659034
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRD89_RS19055 (QRD89_19050) - 3649527..3651191 (+) 1665 WP_008636614.1 peptide ABC transporter substrate-binding protein -
  QRD89_RS19060 (QRD89_19055) hmpA 3651255..3652472 (-) 1218 WP_286096070.1 NO-inducible flavohemoprotein -
  QRD89_RS19065 (QRD89_19060) - 3652644..3653084 (+) 441 WP_008636610.1 Rrf2 family transcriptional regulator -
  QRD89_RS19070 (QRD89_19065) rpsR 3653298..3653525 (-) 228 WP_008636608.1 30S ribosomal protein S18 -
  QRD89_RS19075 (QRD89_19070) ssbA 3653546..3654034 (-) 489 WP_008636605.1 single-stranded DNA-binding protein Machinery gene
  QRD89_RS19080 (QRD89_19075) rpsF 3654047..3654340 (-) 294 WP_008636603.1 30S ribosomal protein S6 -
  QRD89_RS19085 (QRD89_19080) ychF 3654475..3655572 (-) 1098 WP_008636585.1 redox-regulated ATPase YchF -
  QRD89_RS19090 (QRD89_19085) - 3655818..3656012 (-) 195 WP_008636583.1 DUF951 domain-containing protein -
  QRD89_RS19095 (QRD89_19090) - 3656028..3656933 (-) 906 WP_008636581.1 mechanosensitive ion channel family protein -
  QRD89_RS19100 (QRD89_19095) - 3656983..3658002 (-) 1020 WP_008636578.1 hypothetical protein -
  QRD89_RS19105 (QRD89_19100) yyaC 3658092..3658718 (+) 627 WP_008636576.1 spore protease YyaC -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 17665.25 Da        Isoelectric Point: 4.5704

>NTDB_id=846411 QRD89_RS19075 WP_008636605.1 3653546..3654034(-) (ssbA) [Halobacillus sp. ACCC02827]
MLNRVVLAGRLTKDPDLRYTPNGVAVANFTVAVNRPFSNNQGDRDADFINCVVWRRPAENLANFMSKGSLIGVDGRIQTR
SFDNQEGKRVFVTEVVADSVQFLESKGASQGGGNRGGSGFQPNQNQQPSGNNFGSNNNNQRNDDPFADNGEPIDISDDDL
PF

Nucleotide


Download         Length: 489 bp        

>NTDB_id=846411 QRD89_RS19075 WP_008636605.1 3653546..3654034(-) (ssbA) [Halobacillus sp. ACCC02827]
ATGTTAAATCGTGTCGTATTAGCCGGCAGATTGACGAAGGATCCTGATTTACGCTATACGCCGAACGGAGTAGCTGTCGC
CAACTTCACTGTCGCTGTAAACCGTCCTTTTTCCAACAACCAGGGAGATCGCGACGCCGATTTCATCAACTGTGTCGTTT
GGAGACGTCCAGCAGAAAACCTGGCTAACTTTATGAGTAAAGGAAGCCTTATAGGTGTTGATGGACGCATACAGACAAGA
AGCTTCGACAACCAAGAAGGTAAGCGTGTATTCGTTACAGAAGTTGTTGCAGACAGCGTACAGTTCCTAGAATCCAAAGG
TGCTTCCCAAGGCGGAGGAAACCGTGGAGGTTCAGGATTCCAACCAAATCAGAATCAACAACCATCAGGAAACAACTTCG
GTTCTAACAACAACAACCAACGAAACGATGACCCATTCGCAGATAATGGGGAACCTATCGATATATCAGATGACGATCTA
CCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Z2STB9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.535

100

0.685
  ssb Latilactobacillus sakei subsp. sakei 23K

55.491

100

0.593
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

65.432

0.395
  ssb Glaesserella parasuis strain SC1401

33.898

100

0.37