Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   QRD88_RS11375 Genome accession   NZ_CP128114
Coordinates   2211189..2211482 (-) Length   97 a.a.
NCBI ID   WP_024422977.1    Uniprot ID   A0A0M2EIN6
Organism   Bacillus safensis strain G6S3     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2206189..2216482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRD88_RS11325 (QRD88_11320) sinR 2206356..2206691 (+) 336 WP_024422969.1 transcriptional regulator SinR Regulator
  QRD88_RS11330 (QRD88_11325) - 2206759..2207559 (-) 801 WP_024422970.1 biofilm matrix protein TasA -
  QRD88_RS11335 (QRD88_11330) - 2207614..2208186 (-) 573 WP_024422971.1 signal peptidase I SipW -
  QRD88_RS11340 (QRD88_11335) tapA 2208239..2208766 (-) 528 WP_024422972.1 amyloid fiber anchoring/assembly protein TapA -
  QRD88_RS11345 (QRD88_11340) - 2209066..2209344 (+) 279 WP_171464609.1 DUF3889 domain-containing protein -
  QRD88_RS11350 (QRD88_11345) - 2209379..2209573 (-) 195 WP_056767455.1 YqzE family protein -
  QRD88_RS11355 (QRD88_11350) comGG 2209633..2210016 (-) 384 WP_125586574.1 competence type IV pilus minor pilin ComGG -
  QRD88_RS11360 (QRD88_11355) comGF 2210013..2210540 (-) 528 WP_311164128.1 competence type IV pilus minor pilin ComGF -
  QRD88_RS11365 (QRD88_11360) comGE 2210452..2210766 (-) 315 WP_024427988.1 competence type IV pilus minor pilin ComGE -
  QRD88_RS11370 (QRD88_11365) comGD 2210750..2211196 (-) 447 WP_268422516.1 competence type IV pilus minor pilin ComGD -
  QRD88_RS11375 (QRD88_11370) comGC 2211189..2211482 (-) 294 WP_024422977.1 competence type IV pilus major pilin ComGC Machinery gene
  QRD88_RS11380 (QRD88_11375) comGB 2211499..2212539 (-) 1041 WP_024422978.1 competence type IV pilus assembly protein ComGB -
  QRD88_RS11385 (QRD88_11380) comGA 2212520..2213590 (-) 1071 WP_025092972.1 competence type IV pilus ATPase ComGA Machinery gene
  QRD88_RS11390 (QRD88_11385) - 2213768..2214643 (-) 876 WP_024422979.1 STAS domain-containing protein -
  QRD88_RS11400 (QRD88_11395) - 2214867..2215247 (-) 381 WP_007501232.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  QRD88_RS11405 (QRD88_11400) - 2215460..2215702 (+) 243 WP_003217440.1 DUF2626 domain-containing protein -
  QRD88_RS11410 (QRD88_11405) - 2215750..2216388 (-) 639 WP_034621600.1 MBL fold metallo-hydrolase -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10686.62 Da        Isoelectric Point: 7.3218

>NTDB_id=845968 QRD88_RS11375 WP_024422977.1 2211189..2211482(-) (comGC) [Bacillus safensis strain G6S3]
MNDKGFTLLEMLIVMLVISILLLITIPNITRHHQAIQAKGCEGLKSMVSTQVMAYELEHDGKTPSLAELEKEGYVKKGLT
CPNGKAIVIQNGNVKHE

Nucleotide


Download         Length: 294 bp        

>NTDB_id=845968 QRD88_RS11375 WP_024422977.1 2211189..2211482(-) (comGC) [Bacillus safensis strain G6S3]
ATGAATGATAAAGGATTTACCCTGTTAGAAATGTTAATAGTCATGCTCGTAATATCCATTCTTTTACTCATTACCATACC
GAATATCACACGTCATCACCAAGCTATTCAGGCGAAGGGCTGTGAAGGGCTTAAATCAATGGTCAGCACACAAGTGATGG
CATATGAATTGGAGCATGATGGGAAGACGCCATCTTTAGCTGAATTAGAAAAAGAAGGTTATGTCAAAAAGGGATTAACT
TGTCCTAATGGAAAAGCGATTGTCATTCAAAACGGCAACGTGAAGCATGAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M2EIN6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

67.01

100

0.67
  comGC Staphylococcus aureus MW2

42.222

92.784

0.392
  comGC Staphylococcus aureus N315

42.222

92.784

0.392