Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   QRD88_RS11325 Genome accession   NZ_CP128114
Coordinates   2206356..2206691 (+) Length   111 a.a.
NCBI ID   WP_024422969.1    Uniprot ID   -
Organism   Bacillus safensis strain G6S3     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2201356..2211691
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRD88_RS11305 (QRD88_11300) gcvT 2201849..2202946 (-) 1098 WP_024427995.1 glycine cleavage system aminomethyltransferase GcvT -
  QRD88_RS11310 (QRD88_11305) - 2203508..2205178 (+) 1671 WP_133744192.1 SNF2-related protein -
  QRD88_RS11315 (QRD88_11310) - 2205193..2205990 (+) 798 WP_024427993.1 YqhG family protein -
  QRD88_RS11320 (QRD88_11315) - 2206158..2206322 (+) 165 WP_073206269.1 anti-repressor SinI family protein -
  QRD88_RS11325 (QRD88_11320) sinR 2206356..2206691 (+) 336 WP_024422969.1 transcriptional regulator SinR Regulator
  QRD88_RS11330 (QRD88_11325) - 2206759..2207559 (-) 801 WP_024422970.1 biofilm matrix protein TasA -
  QRD88_RS11335 (QRD88_11330) - 2207614..2208186 (-) 573 WP_024422971.1 signal peptidase I SipW -
  QRD88_RS11340 (QRD88_11335) tapA 2208239..2208766 (-) 528 WP_024422972.1 amyloid fiber anchoring/assembly protein TapA -
  QRD88_RS11345 (QRD88_11340) - 2209066..2209344 (+) 279 WP_171464609.1 DUF3889 domain-containing protein -
  QRD88_RS11350 (QRD88_11345) - 2209379..2209573 (-) 195 WP_056767455.1 YqzE family protein -
  QRD88_RS11355 (QRD88_11350) comGG 2209633..2210016 (-) 384 WP_125586574.1 competence type IV pilus minor pilin ComGG -
  QRD88_RS11360 (QRD88_11355) comGF 2210013..2210540 (-) 528 WP_311164128.1 competence type IV pilus minor pilin ComGF -
  QRD88_RS11365 (QRD88_11360) comGE 2210452..2210766 (-) 315 WP_024427988.1 competence type IV pilus minor pilin ComGE -
  QRD88_RS11370 (QRD88_11365) comGD 2210750..2211196 (-) 447 WP_268422516.1 competence type IV pilus minor pilin ComGD -
  QRD88_RS11375 (QRD88_11370) comGC 2211189..2211482 (-) 294 WP_024422977.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12978.56 Da        Isoelectric Point: 5.0026

>NTDB_id=845967 QRD88_RS11325 WP_024422969.1 2206356..2206691(+) (sinR) [Bacillus safensis strain G6S3]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWRKKQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=845967 QRD88_RS11325 WP_024422969.1 2206356..2206691(+) (sinR) [Bacillus safensis strain G6S3]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTTTTAAACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAGAAAAAA
GCAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(74-101)

Helix-turn-helix (HTH_3)

(6-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

94.595

100

0.946