Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   QRD87_RS12250 Genome accession   NZ_CP128109
Coordinates   2342529..2342822 (-) Length   97 a.a.
NCBI ID   WP_008342186.1    Uniprot ID   A0A5K1NAM4
Organism   Bacillus altitudinis strain D9_B_49     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2337529..2347822
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRD87_RS12200 (QRD87_12200) sinR 2337693..2338028 (+) 336 WP_017357978.1 transcriptional regulator SinR Regulator
  QRD87_RS12205 (QRD87_12205) - 2338096..2338896 (-) 801 WP_008342195.1 biofilm matrix protein TasA -
  QRD87_RS12210 (QRD87_12210) - 2338955..2339527 (-) 573 WP_017357979.1 signal peptidase I SipW -
  QRD87_RS12215 (QRD87_12215) tapA 2339577..2340104 (-) 528 WP_061419578.1 amyloid fiber anchoring/assembly protein TapA -
  QRD87_RS12220 (QRD87_12220) - 2340357..2340683 (+) 327 WP_041506959.1 DUF3889 domain-containing protein -
  QRD87_RS12225 (QRD87_12225) - 2340718..2340912 (-) 195 WP_008342191.1 YqzE family protein -
  QRD87_RS12230 (QRD87_12230) comGG 2340973..2341356 (-) 384 WP_041506958.1 competence type IV pilus minor pilin ComGG -
  QRD87_RS12235 (QRD87_12235) comGF 2341353..2341850 (-) 498 WP_286108396.1 competence type IV pilus minor pilin ComGF -
  QRD87_RS12240 (QRD87_12240) comGE 2341792..2342106 (-) 315 WP_058214150.1 competence type IV pilus minor pilin ComGE -
  QRD87_RS12245 (QRD87_12245) comGD 2342090..2342536 (-) 447 WP_057079312.1 competence type IV pilus minor pilin ComGD -
  QRD87_RS12250 (QRD87_12250) comGC 2342529..2342822 (-) 294 WP_008342186.1 competence type IV pilus major pilin ComGC Machinery gene
  QRD87_RS12255 (QRD87_12255) comGB 2342839..2343879 (-) 1041 WP_041506954.1 competence type IV pilus assembly protein ComGB -
  QRD87_RS12260 (QRD87_12260) comGA 2343860..2344930 (-) 1071 WP_024718839.1 competence type IV pilus ATPase ComGA Machinery gene
  QRD87_RS12265 (QRD87_12265) - 2345387..2346259 (-) 873 WP_041506953.1 STAS domain-containing protein -
  QRD87_RS12275 (QRD87_12275) - 2346484..2346864 (-) 381 WP_007501232.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  QRD87_RS12280 (QRD87_12280) - 2347077..2347319 (+) 243 WP_003217440.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10728.62 Da        Isoelectric Point: 6.7081

>NTDB_id=845855 QRD87_RS12250 WP_008342186.1 2342529..2342822(-) (comGC) [Bacillus altitudinis strain D9_B_49]
MNDKGFTLLEMLIVMLVISILLLITIPNITRHHQSIQAKGCEGLKSMVSTQVMAYELEHDGKTPSLAELEKEGYVKKGLT
CPNGKAIFIQNGDVKNE

Nucleotide


Download         Length: 294 bp        

>NTDB_id=845855 QRD87_RS12250 WP_008342186.1 2342529..2342822(-) (comGC) [Bacillus altitudinis strain D9_B_49]
ATGAATGATAAAGGATTTACACTGTTAGAAATGTTAATTGTCATGCTTGTGATCTCCATTCTTTTATTGATCACCATTCC
AAATATCACTCGGCATCATCAAAGCATTCAAGCAAAGGGCTGTGAAGGGCTGAAATCAATGGTGAGTACACAGGTAATGG
CATATGAATTAGAGCATGACGGCAAGACGCCATCTTTAGCTGAATTAGAAAAAGAAGGCTATGTCAAAAAAGGATTAACT
TGTCCGAATGGAAAAGCAATTTTCATTCAAAACGGCGATGTGAAAAATGAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NAM4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

67.01

100

0.67
  comGC Staphylococcus aureus MW2

41.304

94.845

0.392
  comGC Staphylococcus aureus N315

41.304

94.845

0.392