Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   QRD87_RS12200 Genome accession   NZ_CP128109
Coordinates   2337693..2338028 (+) Length   111 a.a.
NCBI ID   WP_017357978.1    Uniprot ID   -
Organism   Bacillus altitudinis strain D9_B_49     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2332693..2343028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRD87_RS12180 (QRD87_12180) gcvT 2333169..2334266 (-) 1098 WP_041506961.1 glycine cleavage system aminomethyltransferase GcvT -
  QRD87_RS12185 (QRD87_12185) - 2334828..2336498 (+) 1671 WP_061419576.1 SNF2-related protein -
  QRD87_RS12190 (QRD87_12190) - 2336513..2337310 (+) 798 WP_017367588.1 YqhG family protein -
  QRD87_RS12195 (QRD87_12195) - 2337495..2337659 (+) 165 WP_008342197.1 anti-repressor SinI family protein -
  QRD87_RS12200 (QRD87_12200) sinR 2337693..2338028 (+) 336 WP_017357978.1 transcriptional regulator SinR Regulator
  QRD87_RS12205 (QRD87_12205) - 2338096..2338896 (-) 801 WP_008342195.1 biofilm matrix protein TasA -
  QRD87_RS12210 (QRD87_12210) - 2338955..2339527 (-) 573 WP_017357979.1 signal peptidase I SipW -
  QRD87_RS12215 (QRD87_12215) tapA 2339577..2340104 (-) 528 WP_061419578.1 amyloid fiber anchoring/assembly protein TapA -
  QRD87_RS12220 (QRD87_12220) - 2340357..2340683 (+) 327 WP_041506959.1 DUF3889 domain-containing protein -
  QRD87_RS12225 (QRD87_12225) - 2340718..2340912 (-) 195 WP_008342191.1 YqzE family protein -
  QRD87_RS12230 (QRD87_12230) comGG 2340973..2341356 (-) 384 WP_041506958.1 competence type IV pilus minor pilin ComGG -
  QRD87_RS12235 (QRD87_12235) comGF 2341353..2341850 (-) 498 WP_286108396.1 competence type IV pilus minor pilin ComGF -
  QRD87_RS12240 (QRD87_12240) comGE 2341792..2342106 (-) 315 WP_058214150.1 competence type IV pilus minor pilin ComGE -
  QRD87_RS12245 (QRD87_12245) comGD 2342090..2342536 (-) 447 WP_057079312.1 competence type IV pilus minor pilin ComGD -
  QRD87_RS12250 (QRD87_12250) comGC 2342529..2342822 (-) 294 WP_008342186.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12936.47 Da        Isoelectric Point: 4.8062

>NTDB_id=845854 QRD87_RS12200 WP_017357978.1 2337693..2338028(+) (sinR) [Bacillus altitudinis strain D9_B_49]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNENDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWKKKQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=845854 QRD87_RS12200 WP_017357978.1 2337693..2338028(+) (sinR) [Bacillus altitudinis strain D9_B_49]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTAAACGAAAATGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAAAAAAAA
GCAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

92.793

100

0.928