Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   QRY07_RS27315 Genome accession   NZ_CP128107
Coordinates   5163733..5164254 (-) Length   173 a.a.
NCBI ID   WP_002113227.1    Uniprot ID   A0A1D3MWM3
Organism   Bacillus cereus strain D5_B_69     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5158733..5169254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRY07_RS27295 (QRY07_27300) rplI 5159943..5160389 (-) 447 WP_002113223.1 50S ribosomal protein L9 -
  QRY07_RS27300 (QRY07_27305) - 5160386..5162359 (-) 1974 WP_002113224.1 DHH family phosphoesterase -
  QRY07_RS27305 (QRY07_27310) - 5162438..5163373 (-) 936 WP_002198684.1 YybS family protein -
  QRY07_RS27310 (QRY07_27315) rpsR 5163455..5163688 (-) 234 WP_000918874.1 30S ribosomal protein S18 -
  QRY07_RS27315 (QRY07_27320) ssbA 5163733..5164254 (-) 522 WP_002113227.1 single-stranded DNA-binding protein Machinery gene
  QRY07_RS27320 (QRY07_27325) rpsF 5164281..5164571 (-) 291 WP_001233781.1 30S ribosomal protein S6 -
  QRY07_RS27325 (QRY07_27330) ychF 5164763..5165863 (-) 1101 WP_002130188.1 redox-regulated ATPase YchF -
  QRY07_RS27330 (QRY07_27335) - 5165979..5166176 (-) 198 WP_000436054.1 DUF951 domain-containing protein -
  QRY07_RS27335 (QRY07_27340) - 5166197..5167054 (-) 858 WP_002113229.1 mechanosensitive ion channel family protein -
  QRY07_RS27340 (QRY07_27345) yyaC 5167315..5167911 (+) 597 WP_002089953.1 spore protease YyaC -
  QRY07_RS27345 (QRY07_27350) spo0J 5167932..5168783 (-) 852 WP_171902578.1 stage 0 sporulation protein Spo0J -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18751.54 Da        Isoelectric Point: 4.9222

>NTDB_id=845818 QRY07_RS27315 WP_002113227.1 5163733..5164254(-) (ssbA) [Bacillus cereus strain D5_B_69]
MMNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTR
NYDGQDGKRVYVTEVLAESVQFLEPRNGGGEQRGSFNQQPSGAGFGNQSSNPFGQSSNPGNSGNTGNSGFTKNDDPFSNV
GQPIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=845818 QRY07_RS27315 WP_002113227.1 5163733..5164254(-) (ssbA) [Bacillus cereus strain D5_B_69]
TTGATGAATCGTGTTATCCTCGTTGGTCGTTTAACTAAGGACCCTGACTTACGTTACACGCCCAATGGTGTTGCAGTAGC
TACTTTTACGTTAGCTGTGAATCGCGCATTTGCGAATCAACAAGGTGAGCGTGAAGCTGACTTTATTAATTGTGTAATAT
GGCGTAAACAAGCAGAAAACGTGGCAAATTATTTGAAAAAAGGTAGCTTAGCAGGCGTAGACGGACGTCTTCAAACTCGT
AATTACGATGGACAAGATGGTAAACGTGTATATGTAACAGAAGTTCTTGCGGAGAGCGTACAATTTTTAGAGCCGCGTAA
TGGCGGTGGGGAGCAACGTGGTTCATTCAATCAGCAACCATCAGGAGCTGGTTTCGGTAACCAAAGCTCTAACCCATTTG
GTCAATCTAGTAATCCCGGTAACTCAGGTAACACTGGTAACTCTGGATTTACGAAGAATGACGATCCATTTTCGAATGTT
GGTCAACCGATTGACATTTCGGACGACGATTTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1D3MWM3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

70.621

100

0.723
  ssb Latilactobacillus sakei subsp. sakei 23K

57.714

100

0.584
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.272

0.393
  ssb Glaesserella parasuis strain SC1401

35.165

100

0.37