NTDB

Overview

Name	ruvB	Type	Machinery gene
Locus tag	V2176_RS13025	Genome accession	NZ_CP143963
Coordinates	2475031..2476035 (-)	Length	334 a.a.
NCBI ID	WP_330937875.1	Uniprot ID	-
Organism	Bacillus licheniformis strain FUA2151
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2470031..2481035

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V2176_RS12995 (V2176_12995)	-	2470899..2471549 (-)	651	WP_003183974.1	DUF421 domain-containing protein	-
V2176_RS13000 (V2176_13000)	-	2471705..2472088 (+)	384	WP_003183976.1	TIGR04086 family membrane protein	-
V2176_RS13005 (V2176_13005)	yajC	2472285..2472548 (-)	264	WP_085959518.1	preprotein translocase subunit YajC	-
V2176_RS13010 (V2176_13010)	tgt	2472595..2473740 (-)	1146	WP_003183980.1	tRNA guanosine(34) transglycosylase Tgt	-
V2176_RS13015 (V2176_13015)	queA	2473769..2474797 (-)	1029	WP_003183982.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
V2176_RS13020 (V2176_13020)	-	2474838..2475038 (-)	201	WP_003183984.1	DUF2905 domain-containing protein	-
V2176_RS13025 (V2176_13025)	ruvB	2475031..2476035 (-)	1005	WP_330937875.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
V2176_RS13030 (V2176_13030)	ruvA	2476045..2476650 (-)	606	WP_003183986.1	Holliday junction branch migration protein RuvA	Machinery gene
V2176_RS13035 (V2176_13035)	-	2476773..2477294 (-)	522	WP_003183987.1	intercompartmental signaling factor BofC	-
V2176_RS13040 (V2176_13040)	-	2477537..2478187 (+)	651	WP_003183988.1	protein kinase family protein	-
V2176_RS13045 (V2176_13045)	-	2478258..2478380 (+)	123	WP_003183989.1	hypothetical protein	-
V2176_RS13050 (V2176_13050)	-	2478465..2478644 (-)	180	WP_003183990.1	small acid-soluble spore protein H	-
V2176_RS13055 (V2176_13055)	-	2478740..2479204 (-)	465	WP_330937876.1	DinB family protein	-
V2176_RS13060 (V2176_13060)	-	2479265..2479975 (-)	711	WP_003183992.1	poly-gamma-glutamate hydrolase family protein	-
V2176_RS13065 (V2176_13065)	-	2480389..2480568 (+)	180	WP_025808021.1	hypothetical protein	-
V2176_RS13070 (V2176_13070)	-	2480660..2480986 (-)	327	WP_330937877.1	hypothetical protein	-

Sequence

Protein

Download Length: 334 a.a. Molecular weight: 37285.74 Da Isoelectric Point: 4.9787

                                >NTDB_id=845757 V2176_RS13025 WP_330937875.1 2475031..2476035(-) (ruvB) [Bacillus licheniformis strain FUA2151]

MDERLVSSELDNHESAIEQSLRPQRLAQYIGQEKVKDNLKVFIEAAKMREETLDHVLLYGPPGLGKTTLAAIIANEMGVN

LRTTSGPAIERPGDLAAILTALEPGDVLFIDEIHRLHRSIEEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATT

RVGLLTAPLRDRFGVLSRLEYYTRDELSEIVIRTAELFEVDIDSLSALEIARRSRGTPRIANRLLRRVRDFAQVLGNSSI

TEEVAVDALERLQVDKLGLDHIDRKLLMGMIEKFGGGPVGINTISATIGEESHTIEDVYEPYLLQIGFIQRTPRGRIVTP

DVYSHFKMEVPNHD

Nucleotide

Download Length: 1005 bp

                                >NTDB_id=845757 V2176_RS13025 WP_330937875.1 2475031..2476035(-) (ruvB) [Bacillus licheniformis strain FUA2151]

ATGGATGAGCGGCTTGTATCAAGTGAACTAGACAACCATGAATCAGCGATTGAGCAAAGTCTGCGTCCGCAAAGACTTGC

TCAGTATATCGGCCAGGAAAAAGTGAAAGATAACCTCAAGGTTTTCATCGAAGCTGCGAAAATGCGGGAGGAAACCCTTG

ACCATGTCTTATTGTACGGGCCGCCGGGATTGGGAAAAACGACGCTCGCCGCGATCATCGCCAACGAAATGGGAGTCAAT

CTCAGAACGACGTCAGGTCCGGCGATCGAGCGCCCCGGCGATTTGGCGGCGATATTAACGGCTCTGGAGCCAGGTGACGT

TTTATTTATAGACGAGATCCACCGCCTGCACCGTTCGATCGAAGAGGTGCTGTATCCTGCGATGGAAGATTTCTGCCTTG

ATATCGTGATCGGCAAAGGACCGTCGGCACGTTCTGTGAGGCTCGATCTTCCTCCTTTTACCCTCGTCGGCGCGACCACA

AGGGTTGGGCTTTTAACCGCGCCTCTCAGGGACAGGTTCGGCGTTCTGTCGAGGCTTGAGTATTACACGCGTGATGAGCT

TTCAGAAATCGTGATCAGAACGGCAGAGCTGTTTGAAGTCGACATCGATTCGCTCTCGGCTCTCGAAATCGCGAGACGGT

CAAGAGGGACGCCGCGGATTGCCAACAGGCTTTTAAGGAGGGTCAGGGATTTTGCCCAGGTGCTTGGAAACAGCTCCATC

ACAGAGGAAGTGGCGGTTGATGCGCTTGAACGCCTCCAGGTTGATAAACTCGGGCTTGACCATATCGACCGCAAGCTTTT

GATGGGCATGATCGAAAAATTTGGCGGCGGCCCCGTCGGCATCAATACGATTTCGGCTACTATCGGTGAGGAGTCTCACA

CGATTGAGGATGTGTATGAGCCGTATCTTCTTCAAATCGGTTTTATTCAAAGAACGCCGCGGGGGCGCATCGTAACCCCT

GATGTTTACAGCCACTTTAAAATGGAGGTTCCGAACCATGACTGA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(21-179)

RuvB AAA lid domain (AAA_lid_4)

(182-255)

RuvB C-terminal winged helix domain (WHD_RuvB)

(256-327)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ruvB	Bacillus subtilis subsp. subtilis str. 168	87.725	100	0.877
ruvB	Streptococcus pneumoniae TIGR4	61.35	97.605	0.599
ruvB	Streptococcus pneumoniae R6	61.35	97.605	0.599
ruvB	Streptococcus pneumoniae D39	61.35	97.605	0.599
ruvB	Synechocystis sp. PCC 6803	57.402	99.102	0.569
ruvB	Helicobacter pylori 26695	53.313	99.401	0.53

Detailed information NTG0845757