Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   VXF94_RS17875 Genome accession   NZ_CP143956
Coordinates   3467014..3467709 (+) Length   231 a.a.
NCBI ID   WP_013353063.1    Uniprot ID   A0A9P1JJ48
Organism   Bacillus amyloliquefaciens strain Fad 108     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3462014..3472709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VXF94_RS17855 (VXF94_17855) - 3462960..3464252 (+) 1293 WP_013353067.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  VXF94_RS17860 (VXF94_17860) comC 3464392..3465144 (+) 753 WP_013353066.1 prepilin peptidase Machinery gene
  VXF94_RS17865 (VXF94_17865) - 3465270..3466271 (+) 1002 WP_013353065.1 SPOR domain-containing protein -
  VXF94_RS17870 (VXF94_17870) - 3466413..3466982 (+) 570 WP_013353064.1 Maf family protein -
  VXF94_RS17875 (VXF94_17875) ysxA/radC 3467014..3467709 (+) 696 WP_013353063.1 RadC family protein Machinery gene
  VXF94_RS17880 (VXF94_17880) mreB 3467801..3468814 (+) 1014 WP_013353062.1 cell shape-determining protein MreB -
  VXF94_RS17885 (VXF94_17885) mreC 3468845..3469708 (+) 864 WP_013353061.1 rod shape-determining protein MreC -
  VXF94_RS17890 (VXF94_17890) mreD 3469705..3470223 (+) 519 WP_014470782.1 rod shape-determining protein MreD -
  VXF94_RS17895 (VXF94_17895) minC 3470277..3470957 (+) 681 WP_013353059.1 septum site-determining protein MinC -
  VXF94_RS17900 (VXF94_17900) minD 3470960..3471763 (+) 804 WP_003152655.1 septum site-determining protein MinD -
  VXF94_RS17905 (VXF94_17905) - 3471892..3472695 (+) 804 WP_013353058.1 M23 family metallopeptidase -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26066.29 Da        Isoelectric Point: 8.9381

>NTDB_id=845642 VXF94_RS17875 WP_013353063.1 3467014..3467709(+) (ysxA/radC) [Bacillus amyloliquefaciens strain Fad 108]
MIIRDLPLKLRDFPEKEKPRERLLHCGAEHLSNNELLAILLRTGTKHESVMNLSHRLLRTFDGLRLLKGASAQELSSIPG
IGTVKAVQILAAIELGSRIHKTSAGEHCVIRSPEDGAKYVMEDMRFLSQEHFVCLYLNTKNQVIHKRTIFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=845642 VXF94_RS17875 WP_013353063.1 3467014..3467709(+) (ysxA/radC) [Bacillus amyloliquefaciens strain Fad 108]
TTGATCATCCGTGATCTGCCGTTAAAATTAAGAGATTTCCCCGAAAAAGAAAAACCGAGAGAGCGGCTTCTGCATTGCGG
GGCCGAACATCTTTCTAACAATGAATTGCTCGCCATTCTGCTGAGGACGGGAACGAAACATGAGTCCGTCATGAATCTCT
CTCACCGGCTGCTGCGGACGTTTGACGGGCTGCGCCTGTTAAAAGGCGCTTCTGCCCAGGAGCTTTCCAGCATCCCCGGA
ATCGGCACGGTGAAAGCCGTTCAGATCCTTGCTGCAATTGAGCTGGGGAGCCGTATTCATAAGACATCCGCCGGAGAGCA
TTGCGTCATCCGTTCTCCCGAAGACGGGGCGAAGTATGTGATGGAGGATATGCGCTTTTTATCCCAAGAGCATTTTGTCT
GTTTATATTTAAATACCAAAAATCAAGTCATTCATAAACGCACCATTTTTATCGGAAGTCTGAATTCATCTATTGTCCAC
CCGCGGGAGGTGTTTAAAGAAGCTTTCAAACGATCCGCCGCGTCCTTCATTTGCGTTCACAATCATCCTTCAGGAGATCC
CACACCGAGCAGGGAAGATATAGAAGTAACTAGACGGCTTTTTGAGTGCGGAAATTTAATCGGCATCGAGTTGCTGGATC
ATTTGGTCATTGGTGACAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(11-87)

RadC-like JAB domain (RadC)

(110-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9P1JJ48

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

87.879

100

0.879
  radC Streptococcus pneumoniae TIGR4

49.524

90.909

0.45
  radC Streptococcus pneumoniae R6

49.048

90.909

0.446
  radC Streptococcus pneumoniae D39

49.048

90.909

0.446
  radC Streptococcus gordonii str. Challis substr. CH1

47.143

90.909

0.429