Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   VXF94_RS10975 Genome accession   NZ_CP143956
Coordinates   2153136..2153654 (+) Length   172 a.a.
NCBI ID   WP_013354263.1    Uniprot ID   A0A9P1JL20
Organism   Bacillus amyloliquefaciens strain Fad 108     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2148136..2158654
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VXF94_RS10955 (VXF94_10955) - 2149214..2149420 (+) 207 WP_004392973.1 DUF951 domain-containing protein -
  VXF94_RS10960 (VXF94_10960) - 2149467..2151470 (+) 2004 WP_014472421.1 molybdopterin-dependent oxidoreductase -
  VXF94_RS10965 (VXF94_10965) ychF 2151597..2152697 (+) 1101 WP_013354265.1 redox-regulated ATPase YchF -
  VXF94_RS10970 (VXF94_10970) rpsF 2152809..2153096 (+) 288 WP_013354264.1 30S ribosomal protein S6 -
  VXF94_RS10975 (VXF94_10975) ssbA 2153136..2153654 (+) 519 WP_013354263.1 single-stranded DNA-binding protein SsbA Machinery gene
  VXF94_RS10980 (VXF94_10980) rpsR 2153698..2153937 (+) 240 WP_004392983.1 30S ribosomal protein S18 -
  VXF94_RS10985 (VXF94_10985) - 2154126..2154713 (+) 588 WP_013354262.1 bifunctional transcriptional activator/DNA repair enzyme AdaA -
  VXF94_RS10990 (VXF94_10990) - 2154706..2155233 (+) 528 WP_013354261.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  VXF94_RS10995 (VXF94_10995) xth 2155272..2156030 (+) 759 WP_013354260.1 exodeoxyribonuclease III -
  VXF94_RS11000 (VXF94_11000) - 2156093..2157031 (+) 939 WP_014471329.1 LacI family DNA-binding transcriptional regulator -
  VXF94_RS11005 (VXF94_11005) - 2157088..2157468 (+) 381 WP_013354257.1 VOC family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18717.29 Da        Isoelectric Point: 4.7621

>NTDB_id=845600 VXF94_RS10975 WP_013354263.1 2153136..2153654(+) (ssbA) [Bacillus amyloliquefaciens strain Fad 108]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQSGEREADFINCVTWRKQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNSGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=845600 VXF94_RS10975 WP_013354263.1 2153136..2153654(+) (ssbA) [Bacillus amyloliquefaciens strain Fad 108]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTAACAAAAGACCCAGAGCTTCGTTATACGCCAAGCGGTGCGGCTGTCGC
CACGTTTACTCTAGCTGTGAATCGTACATTCACGAACCAGTCTGGAGAACGTGAAGCCGATTTCATTAATTGTGTCACTT
GGAGAAAACAAGCCGAAAACGTTGCAAACTTTCTTAAAAAAGGAAGCCTTGCCGGCGTAGACGGCCGTCTTCAGACAAGA
AATTATGAAAATCAGCAGGGACAGCGTGTCTTCGTGACAGAAGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAAAA
CAGCGGCGGTTCTGGTTCAGGCGGATACAACGAAGGAAACAGCGGCGGAGGCCAATACTTTGGCGGAGGCCAAAATGATA
ATCCGTTCGGCGGAAATCAGAACAACCAGAGAAGAAATCAAGGGAACAGCTTTAATGATGATCCATTTGCCAACGACGGC
AAGCCGATTGACATCTCGGATGATGATCTTCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9P1JL20

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

98.256

100

0.983
  ssb Latilactobacillus sakei subsp. sakei 23K

59.322

100

0.61
  ssbB Bacillus subtilis subsp. subtilis str. 168

65.094

61.628

0.401
  ssb Glaesserella parasuis strain SC1401

34.973

100

0.372