Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   V2189_RS31635 Genome accession   NZ_CP143908
Coordinates   6791834..6792331 (+) Length   165 a.a.
NCBI ID   WP_003114685.1    Uniprot ID   A0A0H2ZGD4
Organism   Pseudomonas aeruginosa strain PA4_YH3_36.21_ST773_NDM1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6786834..6797331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V2189_RS31620 (V2189_31620) bfr 6786842..6787306 (+) 465 WP_003093668.1 bacterioferritin -
  V2189_RS31625 (V2189_31625) uvrA 6787378..6790215 (-) 2838 WP_033938966.1 excinuclease ABC subunit UvrA Machinery gene
  V2189_RS31630 (V2189_31630) - 6790429..6791817 (+) 1389 WP_003103910.1 MFS transporter -
  V2189_RS31635 (V2189_31635) ssb 6791834..6792331 (+) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  V2189_RS31640 (V2189_31640) pchA 6792420..6793850 (-) 1431 WP_023099164.1 isochorismate synthase PchA -
  V2189_RS31645 (V2189_31645) pchB 6793829..6794152 (-) 324 WP_330989431.1 isochorismate lyase PchB -
  V2189_RS31650 (V2189_31650) pchC 6794152..6794907 (-) 756 WP_023091007.1 pyochelin biosynthesis editing thioesterase PchC -
  V2189_RS31655 (V2189_31655) pchD 6794904..6796547 (-) 1644 WP_023091008.1 pyochelin biosynthesis salicyl-AMP ligase PchD -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18557.46 Da        Isoelectric Point: 5.2781

>NTDB_id=845526 V2189_RS31635 WP_003114685.1 6791834..6792331(+) (ssb) [Pseudomonas aeruginosa strain PA4_YH3_36.21_ST773_NDM1]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=845526 V2189_RS31635 WP_003114685.1 6791834..6792331(+) (ssb) [Pseudomonas aeruginosa strain PA4_YH3_36.21_ST773_NDM1]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGATGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGATTCGCAGCGCGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAACAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAACCGGCCCAGGACTACGACAGCTTCGAC
GACGACATTCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.576
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.521
  ssb Neisseria meningitidis MC58

47.486

100

0.515