Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   V2192_RS09360 Genome accession   NZ_CP143906
Coordinates   1973477..1976314 (-) Length   945 a.a.
NCBI ID   WP_033938966.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PA15_L5_37.22_ST773_VIM2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1968477..1981314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V2192_RS09330 (V2192_09330) rpsK 1968598..1968987 (+) 390 WP_003093689.1 30S ribosomal protein S11 -
  V2192_RS09335 (V2192_09335) rpsD 1969004..1969624 (+) 621 WP_003093678.1 30S ribosomal protein S4 -
  V2192_RS09340 (V2192_09340) - 1969647..1970648 (+) 1002 WP_003093675.1 DNA-directed RNA polymerase subunit alpha -
  V2192_RS09345 (V2192_09345) rplQ 1970692..1971081 (+) 390 WP_003093672.1 50S ribosomal protein L17 -
  V2192_RS09350 (V2192_09350) katA 1971362..1972810 (+) 1449 WP_003103909.1 catalase KatA -
  V2192_RS09355 (V2192_09355) bfr 1972941..1973405 (+) 465 WP_003093668.1 bacterioferritin -
  V2192_RS09360 (V2192_09360) uvrA 1973477..1976314 (-) 2838 WP_033938966.1 excinuclease ABC subunit UvrA Machinery gene
  V2192_RS09365 (V2192_09365) - 1976528..1977916 (+) 1389 WP_003103910.1 MFS transporter -
  V2192_RS09370 (V2192_09370) ssb 1977933..1978430 (+) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  V2192_RS09375 (V2192_09375) pchA 1978519..1979949 (-) 1431 WP_023099164.1 isochorismate synthase PchA -
  V2192_RS09380 (V2192_09380) pchB 1979946..1980251 (-) 306 WP_003106950.1 isochorismate lyase PchB -
  V2192_RS09385 (V2192_09385) pchC 1980251..1981006 (-) 756 WP_023091007.1 pyochelin biosynthesis editing thioesterase PchC -

Sequence

Protein


Download         Length: 945 a.a.        Molecular weight: 104549.18 Da        Isoelectric Point: 6.6074

>NTDB_id=845267 V2192_RS09360 WP_033938966.1 1973477..1976314(-) (uvrA) [Pseudomonas aeruginosa strain PA15_L5_37.22_ST773_VIM2]
MDKILIRGARTHNLKNVDLTLPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSMMEKPDVDTIEGLS
PAISIEQKSTSHNPRSTVGTITEIYDYLRLLYARVGTPRCPDHDIPLEAQTVSQMVDQVLALPEGSKLMLLAPVIRERKG
EHLAVFDEMRAQGFVRARVDGKLYELDEVPKLDKQKKHSIDVVVDRFKVRADLQQRLAESFETALSLADGIALVAPMDED
EDVEEIIFSARFACPVCGHSISELEPKLFSFNNPAGACPTCDGLSVKQFFDARRVVNGELTLAEGAIRGWDRRNVYYFQM
LGSLAQHYGFSLEEPFDELGAEHQKVVLYGSGRENVDFRYLNDRGDIVKRSHPFEGILPNLERRYRETESATVREELAKF
LSTQPCPDCHGTRLRREARHVWVGDRTLPAITAMPVGEACEYAAGLSLTGRRGEIAAKILKEIRDRLQFLVNVGLDYLTL
DRSADTLSGGEAQRIRLASQIGAGLVGVMYILDEPSIGLHQRDNERLLGTLTHLRNLGNTVIVVEHDEDAIRLADYVVDI
GPGAGVHGGQVVAEGTPDQVMNHPDSLTGKYLSGRKKIAVPAKRTPRDKKKLLKLKGARGNNLQNVNLEIPVGLFTCITG
VSGSGKSTLINNTLFPITATALNGATTLEVAPYDSFDGLQHLDKVVDIDQSPIGRTPRSNPATYTGLFTPIRELFSGVPE
ARSRGYGPGRFSFNVKGGRCEACQGDGVIKVEMHFLPDIYVPCDVCKGKRYNRETLEIRYKGKSIHEVLEMTIEEAREFF
DAVPTLARKLQTLMDVGLSYIKLGQSATTLSGGEAQRVKLSRELSKRDTGKTLYILDEPTTGLHFADIQQLLDVLHRLRD
HGNTVVVIEHNLDVIKTADWLVDLGPEGGSKGGQIIANGTPEQVAEMPQSHTGHFLKPLLERDRA

Nucleotide


Download         Length: 2838 bp        

>NTDB_id=845267 V2192_RS09360 WP_033938966.1 1973477..1976314(-) (uvrA) [Pseudomonas aeruginosa strain PA15_L5_37.22_ST773_VIM2]
GTGGATAAGATCCTGATTCGTGGGGCGCGTACCCACAACCTGAAGAACGTCGACCTCACACTGCCACGCGACAAACTGAT
CGTGATCACCGGTCTTTCCGGTTCCGGCAAGTCTTCCCTGGCTTTCGACACGCTCTATGCGGAAGGCCAGCGGCGCTACG
TGGAATCCCTCTCGGCCTACGCCCGGCAGTTCCTGTCGATGATGGAGAAGCCGGACGTGGACACCATCGAAGGGCTGTCG
CCGGCGATTTCCATCGAACAGAAGTCCACTTCCCACAACCCACGCTCCACCGTGGGTACGATCACCGAGATCTACGACTA
CCTGCGCCTGCTTTATGCCCGCGTCGGTACCCCGCGCTGCCCGGACCACGACATCCCGCTGGAGGCGCAGACCGTCAGCC
AGATGGTCGACCAGGTCCTGGCCCTGCCGGAAGGCAGCAAGCTGATGCTGCTGGCGCCGGTGATCCGCGAGCGCAAGGGC
GAGCACCTGGCGGTGTTCGACGAGATGCGCGCGCAGGGTTTCGTCCGCGCCCGGGTCGACGGCAAGCTCTACGAACTCGA
CGAAGTGCCGAAGCTGGACAAGCAGAAGAAGCACAGCATCGATGTGGTGGTGGACCGCTTCAAGGTTCGCGCGGACCTCC
AGCAACGCCTGGCCGAGTCGTTCGAGACCGCCCTGTCCCTGGCCGACGGTATCGCCCTGGTAGCACCGATGGACGAGGAC
GAGGATGTCGAGGAGATCATCTTCTCGGCGCGCTTCGCCTGCCCGGTCTGCGGCCACTCGATCAGCGAGCTGGAACCCAA
GCTGTTCTCCTTCAACAACCCGGCCGGCGCCTGTCCGACCTGCGACGGCCTCAGCGTGAAGCAATTCTTCGACGCGCGCC
GGGTGGTCAATGGCGAGTTGACCCTGGCCGAGGGCGCGATCCGCGGCTGGGACCGGCGCAACGTCTATTACTTCCAGATG
CTCGGCTCGCTGGCCCAGCATTACGGCTTCAGCCTGGAAGAACCCTTCGACGAACTCGGCGCCGAGCACCAGAAGGTGGT
GCTCTACGGCTCCGGCCGGGAAAACGTCGACTTCCGCTATCTCAACGACCGCGGCGACATCGTCAAGCGTTCGCATCCCT
TCGAAGGCATCCTGCCGAACCTTGAGCGGCGCTACCGCGAGACCGAGTCGGCCACGGTCCGCGAGGAGCTGGCCAAGTTC
CTCAGCACCCAGCCCTGCCCGGATTGCCACGGTACCCGCCTGCGCCGCGAGGCGCGGCATGTGTGGGTCGGCGACCGGAC
GCTGCCGGCGATCACCGCGATGCCGGTCGGCGAGGCCTGCGAGTATGCCGCCGGACTCAGCCTGACCGGCCGCCGTGGCG
AGATCGCGGCGAAGATCCTCAAGGAAATCCGCGACCGCCTGCAATTCCTGGTCAACGTCGGCCTCGACTACCTGACCCTC
GACCGCAGCGCCGACACCCTGTCCGGCGGCGAAGCCCAGCGCATCCGCCTGGCCAGCCAGATCGGCGCCGGCCTGGTGGG
AGTGATGTACATCCTCGACGAACCCTCGATCGGCCTGCACCAACGCGACAACGAACGCCTGCTCGGCACCCTCACCCACC
TGCGCAACCTCGGCAACACGGTGATCGTGGTCGAGCACGACGAGGACGCGATCCGACTCGCCGACTACGTCGTCGACATC
GGTCCGGGGGCCGGCGTGCACGGCGGCCAGGTAGTGGCGGAAGGTACGCCCGACCAGGTGATGAACCACCCCGACTCGCT
GACCGGCAAGTACCTTTCCGGGCGCAAGAAAATCGCGGTTCCGGCCAAGCGCACCCCGCGCGACAAGAAGAAGCTGCTGA
AGCTGAAAGGCGCCCGCGGCAACAACCTGCAGAACGTCAACCTGGAAATCCCGGTCGGCCTGTTCACCTGCATCACCGGG
GTCTCGGGCTCCGGCAAGTCGACGCTGATCAACAACACCCTGTTCCCGATCACCGCCACCGCGCTGAACGGCGCGACTAC
CCTGGAAGTGGCGCCGTACGACTCGTTCGACGGCCTGCAGCACCTGGACAAGGTGGTCGACATCGACCAGAGCCCGATCG
GTCGTACCCCGCGCTCCAACCCGGCGACCTATACCGGCCTGTTCACGCCGATCCGCGAACTGTTCTCCGGCGTGCCGGAG
GCCCGCTCGCGCGGCTACGGTCCCGGCCGCTTCTCGTTCAACGTCAAGGGCGGCCGTTGCGAGGCCTGCCAGGGCGACGG
CGTGATCAAGGTGGAGATGCACTTCCTGCCGGACATCTACGTTCCCTGCGACGTCTGCAAGGGCAAGCGCTACAACCGCG
AGACCCTGGAGATCCGCTACAAGGGCAAGAGCATCCACGAGGTGCTGGAGATGACCATCGAGGAAGCCCGCGAGTTCTTC
GACGCCGTCCCCACCCTGGCGCGCAAGCTGCAGACACTGATGGACGTCGGCCTGTCCTACATCAAGCTGGGCCAGAGCGC
GACCACCCTCTCGGGCGGCGAGGCACAGCGGGTCAAGCTGTCCCGCGAGCTGTCCAAGCGCGACACCGGCAAGACCCTGT
ACATCCTCGACGAACCGACCACCGGCCTGCATTTCGCCGACATCCAGCAACTGCTCGACGTGCTCCACCGCCTGCGCGAC
CACGGCAACACCGTGGTGGTGATCGAGCACAACCTGGACGTGATCAAGACCGCCGACTGGCTGGTCGACCTCGGCCCCGA
GGGCGGCTCCAAGGGTGGCCAGATCATCGCCAACGGCACGCCAGAGCAGGTGGCCGAGATGCCCCAGTCGCACACCGGCC
ACTTCCTCAAGCCGCTGCTGGAACGCGATCGCGCCTGA

Domains

Predicted by InterProScan.

UvrA DNA-binding domain (UvrA_DNA-bind)

(291-399)

UvrA interaction domain (UvrA_inter)

(130-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

57.128

100

0.572
  uvrA Streptococcus pneumoniae TIGR4

57.128

100

0.572
  uvrA Streptococcus pneumoniae D39

57.128

100

0.572