Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QSG87_RS16465 Genome accession   NZ_CP127923
Coordinates   3383331..3383915 (-) Length   194 a.a.
NCBI ID   WP_317023661.1    Uniprot ID   -
Organism   Acinetobacter chinensis strain SAAc573     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3378331..3388915
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSG87_RS16440 (QSG87_16445) - 3379044..3380438 (-) 1395 WP_317023656.1 hypothetical protein -
  QSG87_RS16445 (QSG87_16450) ahpC 3380697..3381260 (-) 564 WP_317023657.1 alkyl hydroperoxide reductase subunit C -
  QSG87_RS16450 (QSG87_16455) - 3381445..3382065 (-) 621 WP_317023658.1 TetR/AcrR family transcriptional regulator -
  QSG87_RS16455 (QSG87_16460) - 3382201..3382671 (+) 471 WP_317023659.1 hotdog fold domain-containing protein -
  QSG87_RS16460 (QSG87_16465) - 3382741..3383190 (-) 450 WP_317023660.1 hypothetical protein -
  QSG87_RS16465 (QSG87_16470) ssb 3383331..3383915 (-) 585 WP_317023661.1 single-stranded DNA-binding protein Machinery gene
  QSG87_RS16470 (QSG87_16475) - 3383967..3385331 (-) 1365 WP_087512064.1 MFS transporter -
  QSG87_RS16475 (QSG87_16480) - 3385466..3386551 (-) 1086 WP_317023662.1 DUF475 domain-containing protein -
  QSG87_RS16480 (QSG87_16485) tenA 3386765..3387436 (+) 672 WP_087512062.1 thiaminase II -
  QSG87_RS16485 (QSG87_16490) - 3387499..3388224 (-) 726 WP_087512061.1 hypothetical protein -
  QSG87_RS16490 (QSG87_16495) - 3388477..3388761 (-) 285 WP_087512060.1 YciI family protein -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 21295.03 Da        Isoelectric Point: 6.4819

>NTDB_id=845267 QSG87_RS16465 WP_317023661.1 3383331..3383915(-) (ssb) [Acinetobacter chinensis strain SAAc573]
MRGVNKVILVGTLGKDPETKTFPNGGSLTQFSIATSDSWVDKNSGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDSNRQQNEQGQGFEQPRFNNNSQGGYNNNQQGGYGNQGGNNQGGYGNQGGQA
PQSGYANNNPSGFAPKAPAAPAAAPADLDDDLPF

Nucleotide


Download         Length: 585 bp        

>NTDB_id=845267 QSG87_RS16465 WP_317023661.1 3383331..3383915(-) (ssb) [Acinetobacter chinensis strain SAAc573]
ATGCGTGGTGTAAATAAAGTTATTTTAGTGGGTACTTTAGGTAAAGATCCTGAAACGAAAACATTCCCAAACGGGGGCTC
ACTCACTCAGTTTTCTATCGCAACCAGTGATTCCTGGGTAGATAAAAACTCAGGCGAACGTAAAGAACAGACAGAATGGC
ACCGTATTGTACTGCATAACCGTTTAGGTGAAATCGCACAGCAGTATCTGCGTAAAGGTTCAAAAGTTTATATCGAAGGT
TCACTGCGTACCCGTCAGTGGACCGACCAGAATGGACAGGAACGCTATACCACTGAAATCCGTGGTGACCAGATGCAGAT
GCTGGACAGCAACCGCCAGCAGAATGAGCAGGGTCAGGGCTTTGAACAGCCACGTTTCAACAATAACAGTCAGGGTGGTT
ATAACAATAACCAGCAGGGCGGTTATGGTAATCAGGGTGGAAACAACCAGGGTGGTTATGGCAATCAGGGCGGTCAGGCA
CCTCAGTCTGGTTATGCCAACAATAACCCAAGTGGTTTTGCACCAAAAGCACCTGCAGCTCCAGCCGCAGCACCTGCTGA
TTTAGATGATGATCTACCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50

100

0.515
  ssb Vibrio cholerae strain A1552

43.719

100

0.448
  ssb Neisseria meningitidis MC58

40.404

100

0.412
  ssb Neisseria gonorrhoeae MS11

39.286

100

0.397