Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   QSG87_RS16115 Genome accession   NZ_CP127923
Coordinates   3313399..3314127 (-) Length   242 a.a.
NCBI ID   WP_087549837.1    Uniprot ID   -
Organism   Acinetobacter chinensis strain SAAc573     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3308399..3319127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSG87_RS16095 (QSG87_16100) aroB 3309008..3310087 (-) 1080 WP_087549841.1 3-dehydroquinate synthase -
  QSG87_RS16100 (QSG87_16105) aroK 3310113..3310652 (-) 540 WP_087549840.1 shikimate kinase AroK -
  QSG87_RS16105 (QSG87_16110) pilQ 3310688..3312814 (-) 2127 WP_171405620.1 type IV pilus secretin PilQ family protein Machinery gene
  QSG87_RS16110 (QSG87_16115) pilP 3312875..3313399 (-) 525 WP_087549838.1 pilus assembly protein PilP Machinery gene
  QSG87_RS16115 (QSG87_16120) pilO 3313399..3314127 (-) 729 WP_087549837.1 type 4a pilus biogenesis protein PilO Machinery gene
  QSG87_RS16120 (QSG87_16125) pilN 3314124..3314792 (-) 669 WP_317023617.1 PilN domain-containing protein Machinery gene
  QSG87_RS16125 (QSG87_16130) pilM 3314792..3315850 (-) 1059 WP_087512124.1 pilus assembly protein PilM Machinery gene
  QSG87_RS16130 (QSG87_16135) ponA 3316016..3318592 (+) 2577 WP_317023618.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 26900.46 Da        Isoelectric Point: 4.9731

>NTDB_id=845264 QSG87_RS16115 WP_087549837.1 3313399..3314127(-) (pilO) [Acinetobacter chinensis strain SAAc573]
MSRDEFDELNQDAAVAPKKKMTLDKFVQQFNTLDPNNYGSWPLSVKITCWIFIALIICAIGYFVVIKPKLDAISSANAQE
QNLLNEFREKDSKLRNLQQYQLQLQQMEASFNQQLEQLPKETEIPGLVEDINVTGVNSGLKFKNIRLEGEVKQEFFIEQP
ISIEATGDYHAFGSFVSGIAALPRIVTLHDFTITASENKEKKSDVPQVSYTAKAKTYRYIGNTDNQAAGTAPADAAAAGG
AK

Nucleotide


Download         Length: 729 bp        

>NTDB_id=845264 QSG87_RS16115 WP_087549837.1 3313399..3314127(-) (pilO) [Acinetobacter chinensis strain SAAc573]
ATGAGTCGCGATGAATTTGATGAGTTAAATCAGGATGCTGCTGTTGCTCCGAAAAAGAAAATGACGCTGGATAAGTTTGT
TCAGCAGTTCAATACGCTTGATCCGAATAATTATGGCAGCTGGCCTTTATCTGTAAAAATCACCTGCTGGATTTTTATCG
CACTGATTATTTGTGCAATAGGCTATTTTGTGGTGATCAAACCGAAACTTGATGCAATCTCCAGTGCCAATGCACAGGAA
CAGAATCTGCTGAATGAGTTCCGTGAAAAAGACTCCAAACTGCGTAATTTACAGCAGTATCAGTTGCAGTTGCAGCAGAT
GGAAGCAAGTTTTAACCAACAGCTTGAACAGCTGCCAAAGGAAACTGAAATTCCTGGACTGGTTGAAGATATTAACGTGA
CGGGTGTGAATTCAGGACTGAAGTTTAAAAATATCCGTCTTGAAGGTGAAGTGAAGCAGGAATTCTTTATTGAACAGCCG
ATATCCATTGAAGCAACGGGTGATTATCATGCCTTTGGTTCATTTGTCAGTGGTATTGCTGCACTTCCACGTATTGTGAC
TTTACATGATTTTACAATTACAGCATCTGAGAACAAAGAGAAGAAATCTGATGTTCCTCAGGTCAGTTATACGGCAAAAG
CAAAAACTTACCGTTATATCGGTAATACAGATAATCAGGCGGCTGGTACTGCTCCAGCGGATGCAGCGGCTGCTGGAGGA
GCGAAATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(74-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

72.5

99.174

0.719
  comO Acinetobacter baylyi ADP1

72.727

95.455

0.694