Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   QSG87_RS16110 Genome accession   NZ_CP127923
Coordinates   3312875..3313399 (-) Length   174 a.a.
NCBI ID   WP_087549838.1    Uniprot ID   -
Organism   Acinetobacter chinensis strain SAAc573     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3307875..3318399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSG87_RS16090 (QSG87_16095) - 3308170..3308997 (-) 828 WP_087549842.1 hypothetical protein -
  QSG87_RS16095 (QSG87_16100) aroB 3309008..3310087 (-) 1080 WP_087549841.1 3-dehydroquinate synthase -
  QSG87_RS16100 (QSG87_16105) aroK 3310113..3310652 (-) 540 WP_087549840.1 shikimate kinase AroK -
  QSG87_RS16105 (QSG87_16110) pilQ 3310688..3312814 (-) 2127 WP_171405620.1 type IV pilus secretin PilQ family protein Machinery gene
  QSG87_RS16110 (QSG87_16115) pilP 3312875..3313399 (-) 525 WP_087549838.1 pilus assembly protein PilP Machinery gene
  QSG87_RS16115 (QSG87_16120) pilO 3313399..3314127 (-) 729 WP_087549837.1 type 4a pilus biogenesis protein PilO Machinery gene
  QSG87_RS16120 (QSG87_16125) pilN 3314124..3314792 (-) 669 WP_317023617.1 PilN domain-containing protein Machinery gene
  QSG87_RS16125 (QSG87_16130) pilM 3314792..3315850 (-) 1059 WP_087512124.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19003.01 Da        Isoelectric Point: 7.1655

>NTDB_id=845263 QSG87_RS16110 WP_087549838.1 3312875..3313399(-) (pilP) [Acinetobacter chinensis strain SAAc573]
MKTKISLALVAGLLLAGCDSRIDAVNQQMADIRNQPPIPIEAAPVFEPAPTFNYSAHQLKSPFMPSSLAAELKIMAGKRV
YPNLNRQPQPLESYALEALNMKGSMRSQTGDVLALIQTPDGEVERVQRGSYMGMNHGRVVNITPTQIDLLEIIPDGREGY
VERPRSLVLIGPAP

Nucleotide


Download         Length: 525 bp        

>NTDB_id=845263 QSG87_RS16110 WP_087549838.1 3312875..3313399(-) (pilP) [Acinetobacter chinensis strain SAAc573]
ATGAAAACAAAAATTTCTCTCGCTTTAGTTGCAGGTCTGTTGCTGGCAGGATGTGATTCGCGTATTGATGCAGTGAATCA
GCAGATGGCGGATATCCGTAATCAGCCACCGATTCCAATCGAAGCTGCACCTGTGTTTGAACCTGCGCCAACATTTAACT
ATTCGGCACATCAGCTGAAAAGTCCATTTATGCCAAGTTCACTGGCTGCTGAGCTGAAAATCATGGCGGGGAAACGGGTT
TATCCAAACCTGAACAGACAGCCTCAGCCACTTGAAAGCTATGCACTTGAAGCACTGAATATGAAAGGCAGTATGCGCAG
TCAGACGGGTGACGTGCTTGCTCTGATTCAGACGCCTGATGGTGAGGTTGAGCGTGTGCAGCGTGGCAGTTATATGGGGA
TGAATCATGGTCGTGTGGTGAATATCACGCCTACGCAGATTGACCTTTTGGAAATTATTCCGGATGGGCGTGAGGGCTAT
GTGGAACGGCCGAGAAGCCTGGTGTTAATAGGACCAGCGCCTTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(26-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

77.143

100

0.776
  comL Acinetobacter baylyi ADP1

68.966

100

0.69