Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   QSG87_RS16120 Genome accession   NZ_CP127923
Coordinates   3314124..3314792 (-) Length   222 a.a.
NCBI ID   WP_317023617.1    Uniprot ID   -
Organism   Acinetobacter chinensis strain SAAc573     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3309124..3319792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSG87_RS16100 (QSG87_16105) aroK 3310113..3310652 (-) 540 WP_087549840.1 shikimate kinase AroK -
  QSG87_RS16105 (QSG87_16110) pilQ 3310688..3312814 (-) 2127 WP_171405620.1 type IV pilus secretin PilQ family protein Machinery gene
  QSG87_RS16110 (QSG87_16115) pilP 3312875..3313399 (-) 525 WP_087549838.1 pilus assembly protein PilP Machinery gene
  QSG87_RS16115 (QSG87_16120) pilO 3313399..3314127 (-) 729 WP_087549837.1 type 4a pilus biogenesis protein PilO Machinery gene
  QSG87_RS16120 (QSG87_16125) pilN 3314124..3314792 (-) 669 WP_317023617.1 PilN domain-containing protein Machinery gene
  QSG87_RS16125 (QSG87_16130) pilM 3314792..3315850 (-) 1059 WP_087512124.1 pilus assembly protein PilM Machinery gene
  QSG87_RS16130 (QSG87_16135) ponA 3316016..3318592 (+) 2577 WP_317023618.1 penicillin-binding protein PBP1a -
  QSG87_RS16135 (QSG87_16140) - 3318665..3319468 (-) 804 WP_317023619.1 putative RNA methyltransferase -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 24640.07 Da        Isoelectric Point: 5.1363

>NTDB_id=845265 QSG87_RS16120 WP_317023617.1 3314124..3314792(-) (pilN) [Acinetobacter chinensis strain SAAc573]
MARINLLPWRDALREKRKKEFIAICIGAALIGVLAVVLAWFFYDQKLQDQEQANQLVISTNQNLDVQLKSLEGLQDQRNA
IVERMKLIQGLQGQRPVTVRLVDELVRVTPASMYITKFDRLGDKFTIEGKAESPNTVAEFLRNLEASPWYRNAFMNSFLA
KDEDKNKTQTSVVPRVEESYGTFVVTADLDEIAAPVTSEKTADTAAVSAATTTNGSTAGAAQ

Nucleotide


Download         Length: 669 bp        

>NTDB_id=845265 QSG87_RS16120 WP_317023617.1 3314124..3314792(-) (pilN) [Acinetobacter chinensis strain SAAc573]
ATGGCAAGAATTAACCTGCTCCCTTGGCGTGATGCGTTAAGGGAAAAACGAAAAAAAGAATTTATAGCAATCTGTATTGG
GGCTGCTTTAATTGGGGTGCTTGCTGTTGTACTGGCATGGTTCTTCTATGATCAGAAACTTCAGGATCAGGAACAGGCGA
ATCAGCTGGTGATCAGTACCAATCAGAATCTTGATGTTCAGCTCAAATCACTTGAGGGACTCCAAGATCAGCGTAATGCG
ATTGTGGAACGGATGAAGCTGATTCAGGGGCTGCAAGGGCAGAGACCGGTTACAGTGCGTCTTGTGGATGAGCTTGTACG
TGTTACACCTGCATCTATGTACATTACAAAGTTTGATCGGCTGGGAGATAAATTCACAATTGAAGGTAAGGCGGAAAGCC
CAAATACAGTGGCTGAATTCCTGAGAAATCTGGAAGCATCTCCGTGGTACCGCAACGCATTTATGAATTCATTCCTGGCA
AAAGATGAAGATAAGAATAAAACCCAGACTTCAGTTGTGCCTCGTGTTGAAGAAAGCTATGGAACTTTTGTGGTTACAGC
GGATCTCGACGAAATTGCAGCACCGGTAACATCAGAAAAAACTGCTGATACAGCAGCGGTATCTGCGGCTACAACAACGA
ATGGTTCAACAGCGGGGGCAGCACAATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

65.315

100

0.653
  comN Acinetobacter baylyi ADP1

68.571

94.595

0.649