Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QSG86_RS16440 Genome accession   NZ_CP127915
Coordinates   3298488..3298817 (-) Length   109 a.a.
NCBI ID   WP_317032469.1    Uniprot ID   -
Organism   Acinetobacter sp. SAAs474     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3293488..3303817
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSG86_RS16420 (QSG86_16415) - 3293904..3294200 (+) 297 WP_317032467.1 YciI family protein -
  QSG86_RS16425 (QSG86_16420) bla 3294864..3295721 (-) 858 WP_317032468.1 class A beta-lactamase -
  QSG86_RS16430 (QSG86_16425) - 3295768..3295965 (-) 198 WP_410487489.1 single-stranded DNA-binding protein -
  QSG86_RS16435 (QSG86_16430) - 3296091..3296228 (-) 138 WP_410487831.1 hypothetical protein -
  QSG86_RS16440 (QSG86_16435) ssb 3298488..3298817 (-) 330 WP_317032469.1 single-stranded DNA-binding protein Machinery gene
  QSG86_RS16445 (QSG86_16440) - 3299083..3301509 (-) 2427 WP_317032470.1 DUF927 domain-containing protein -
  QSG86_RS16450 (QSG86_16445) - 3301502..3301804 (-) 303 WP_317032471.1 hypothetical protein -
  QSG86_RS16455 (QSG86_16450) - 3301807..3302106 (-) 300 WP_317032472.1 hypothetical protein -
  QSG86_RS16460 (QSG86_16455) - 3302115..3302483 (-) 369 WP_317032473.1 hypothetical protein -
  QSG86_RS16465 (QSG86_16460) - 3302476..3302991 (-) 516 WP_317032474.1 Bro-N domain-containing protein -
  QSG86_RS16470 (QSG86_16465) - 3302991..3303200 (-) 210 WP_317032475.1 helix-turn-helix domain-containing protein -
  QSG86_RS16475 (QSG86_16470) - 3303204..3303539 (-) 336 WP_317032476.1 hypothetical protein -
  QSG86_RS16480 (QSG86_16475) - 3303543..3303758 (-) 216 WP_317032477.1 transcriptional regulator -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 12290.11 Da        Isoelectric Point: 10.4275

>NTDB_id=845225 QSG86_RS16440 WP_317032469.1 3298488..3298817(-) (ssb) [Acinetobacter sp. SAAs474]
MPNVNKVILMGVLGRDPESKQFPNGGSIATFSMATTEQWKDKTTGERKELTEWHRITANNRLAEIAGKYLKKGSKVYIEG
SLRTRKWKDKASGADREVVEVRADVLQLL

Nucleotide


Download         Length: 330 bp        

>NTDB_id=845225 QSG86_RS16440 WP_317032469.1 3298488..3298817(-) (ssb) [Acinetobacter sp. SAAs474]
ATGCCAAACGTGAACAAAGTTATTTTAATGGGTGTATTGGGTCGTGACCCTGAGAGCAAACAATTTCCTAATGGTGGGAG
TATTGCCACTTTCAGTATGGCTACCACTGAGCAATGGAAAGACAAGACCACTGGAGAACGAAAGGAGCTTACAGAATGGC
ACAGAATCACTGCTAACAACCGACTAGCTGAGATTGCAGGCAAGTACCTTAAAAAAGGTAGTAAGGTTTATATAGAGGGT
AGTTTAAGGACTAGAAAGTGGAAAGATAAAGCCAGTGGAGCAGATCGGGAAGTGGTAGAAGTTCGGGCAGATGTATTGCA
GCTACTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

58.716

100

0.587
  ssb Vibrio cholerae strain A1552

61.224

89.908

0.55
  ssb Neisseria meningitidis MC58

49.533

98.165

0.486
  ssb Neisseria gonorrhoeae MS11

49.533

98.165

0.486