Detailed information    

insolico Bioinformatically predicted

Overview


Name   tsaP   Type   Machinery gene
Locus tag   QSG85_RS16845 Genome accession   NZ_CP127906
Coordinates   3611356..3612510 (+) Length   384 a.a.
NCBI ID   WP_280034008.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain SAAb472     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 3606356..3617510
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSG85_RS16820 (QSG85_16825) - 3606508..3607722 (+) 1215 WP_001177950.1 oxygenase MpaB family protein -
  QSG85_RS16825 (QSG85_16830) - 3607792..3607998 (-) 207 WP_000182542.1 hypothetical protein -
  QSG85_RS16830 (QSG85_16835) - 3608052..3610166 (-) 2115 WP_280034009.1 TonB-dependent copper receptor -
  QSG85_RS16835 (QSG85_16840) - 3610238..3610666 (-) 429 WP_000231981.1 DUF2946 family protein -
  QSG85_RS16840 (QSG85_16845) def 3610703..3611233 (-) 531 WP_001196539.1 peptide deformylase -
  QSG85_RS16845 (QSG85_16850) tsaP 3611356..3612510 (+) 1155 WP_280034008.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  QSG85_RS16850 (QSG85_16855) dprA 3612531..3613661 (+) 1131 WP_002009557.1 DNA-processing protein DprA Machinery gene
  QSG85_RS16855 (QSG85_16860) - 3613712..3614281 (+) 570 WP_000633612.1 L-threonylcarbamoyladenylate synthase -
  QSG85_RS16860 (QSG85_16865) - 3614673..3615593 (-) 921 WP_000084546.1 DMT family transporter -
  QSG85_RS16865 (QSG85_16870) - 3615699..3616349 (-) 651 WP_012300783.1 TetR/AcrR family transcriptional regulator -

Sequence


Protein


Download         Length: 384 a.a.        Molecular weight: 42378.33 Da        Isoelectric Point: 8.5816

>NTDB_id=845191 QSG85_RS16845 WP_280034008.1 3611356..3612510(+) (tsaP) [Acinetobacter baumannii strain SAAb472]
MKKVFNGMVNFHALGIKKHLLALALCTGVAIGTIAEVHATSPNHNPPSLKSNAPNVYVVKRGDTLWDISGHFLNKPWRWP
EIWASNQHVKNPHWIYPGDRLLLCSLDGRPLVGKDEGDGCVGIIRRYTGQTTNLQPQVRVEALNNSVPVIPLEHIKQWLE
NSTILPADSITNTPYIVGTADQRVLAGKGQTIYARGQGLINGQRYAVYREGEPYYFTDNKVKKHSLGIELLQVASGVAVS
SEKDITTLELTDSYNAEVRRGDRVMPEEQATLPTLFYPVDAKQVTDGGKIIRVMGSIGRAAKNSVVTLDRGTTQGVQVGQ
VFDITQQGESIRDPKTKEVIQLPGQQIGSLMVFRTFDQLSYAYVLESDLPIKVGSSIQPPQFND

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=845191 QSG85_RS16845 WP_280034008.1 3611356..3612510(+) (tsaP) [Acinetobacter baumannii strain SAAb472]
ATGAAAAAGGTTTTTAACGGCATGGTTAATTTTCATGCCTTGGGGATAAAGAAGCATTTACTTGCTTTGGCGCTCTGTAC
AGGTGTCGCAATCGGTACGATAGCAGAGGTTCATGCAACCAGTCCGAACCATAATCCACCCTCCCTTAAAAGTAATGCAC
CCAATGTATATGTTGTAAAACGTGGGGATACTTTATGGGATATTTCAGGACATTTTCTAAATAAACCATGGCGTTGGCCT
GAAATCTGGGCGAGCAACCAACATGTTAAAAATCCACACTGGATCTATCCGGGTGACCGATTACTATTATGTAGCCTAGA
TGGGCGTCCTTTAGTCGGTAAAGATGAGGGGGACGGCTGTGTCGGTATTATCCGTCGCTATACAGGTCAAACCACAAACC
TACAACCACAAGTTCGCGTCGAAGCATTAAATAATAGCGTTCCGGTTATTCCACTTGAACATATTAAACAGTGGTTAGAG
AACAGTACTATTTTACCAGCCGACTCAATTACCAACACACCTTATATTGTTGGTACAGCCGATCAACGTGTACTTGCAGG
AAAAGGCCAGACTATTTATGCACGAGGACAAGGCTTAATTAATGGGCAGCGTTATGCAGTCTACCGAGAAGGTGAACCTT
ACTATTTCACAGACAATAAAGTTAAAAAGCATAGTTTAGGGATTGAGTTACTACAAGTTGCTTCAGGTGTTGCGGTATCT
TCTGAAAAAGATATTACTACATTAGAACTAACAGATAGTTATAACGCTGAAGTACGTCGTGGCGATCGTGTTATGCCTGA
AGAGCAAGCTACTTTGCCAACATTATTTTACCCAGTAGATGCGAAGCAAGTGACGGATGGTGGCAAGATTATTCGTGTCA
TGGGTTCAATTGGTAGAGCTGCAAAAAATAGTGTAGTGACTTTGGACCGCGGTACAACCCAGGGCGTTCAAGTAGGCCAA
GTTTTTGATATTACTCAACAAGGTGAATCAATTCGCGACCCTAAAACCAAAGAAGTAATTCAACTTCCTGGCCAACAAAT
TGGCAGTCTAATGGTTTTTAGAACTTTTGATCAGCTAAGTTATGCTTATGTTTTAGAGAGCGATTTACCAATTAAGGTTG
GTTCAAGCATTCAGCCACCTCAATTTAATGATTAA

Domains


Predicted by InterproScan.

(57-102)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

98.958

100

0.99