Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QSG84_RS11675 Genome accession   NZ_CP127893
Coordinates   2506046..2506612 (+) Length   188 a.a.
NCBI ID   WP_317030548.1    Uniprot ID   A0AA97F1Z0
Organism   Acinetobacter sp. SAAs470     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2501046..2511612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSG84_RS11655 (QSG84_11650) - 2501529..2501867 (+) 339 WP_317030544.1 GlpM family protein -
  QSG84_RS11660 (QSG84_11655) tenA 2501963..2502634 (-) 672 WP_317030545.1 thiaminase II -
  QSG84_RS11665 (QSG84_11660) - 2503153..2504244 (+) 1092 WP_317030546.1 DUF475 domain-containing protein -
  QSG84_RS11670 (QSG84_11665) - 2504630..2505994 (+) 1365 WP_317030547.1 MFS transporter -
  QSG84_RS11675 (QSG84_11670) ssb 2506046..2506612 (+) 567 WP_317030548.1 single-stranded DNA-binding protein Machinery gene
  QSG84_RS11680 (QSG84_11675) - 2506735..2506896 (-) 162 WP_317030549.1 hypothetical protein -
  QSG84_RS11685 (QSG84_11680) - 2507226..2507977 (-) 752 Protein_2261 IS5 family transposase -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20956.79 Da        Isoelectric Point: 6.4841

>NTDB_id=845137 QSG84_RS11675 WP_317030548.1 2506046..2506612(+) (ssb) [Acinetobacter sp. SAAs470]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSESWVDKNSGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDSNRQQGEQGQAGFEQPRFNNNQTGYAANNTQQTGYANQGNFNQNQAGGGYA
NNNANSFAAKPQAAPSPAPVDLDDDLPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=845137 QSG84_RS11675 WP_317030548.1 2506046..2506612(+) (ssb) [Acinetobacter sp. SAAs470]
ATGCGCGGTGTAAATAAAGTTATTTTGGTGGGAACTTTAGGTCGAGACCCTGAAACGAAAACTTTTCCAAACGGTGGGTC
ATTGACTCAATTTTCCATTGCAACTAGCGAGTCTTGGGTGGATAAAAACTCGGGTGAACGTAAAGAGCAAACAGAATGGC
ATCGTATTGTTTTACATAATCGTTTAGGTGAAATTGCACAGCAATATCTACGTAAAGGTTCTAAAGTCTATATTGAAGGT
TCACTAAGAACTCGTCAGTGGACAGATCAAAATGGTCAGGAACGTTATACCACAGAAATTCGTGGTGAACAGATGCAAAT
GCTTGATAGTAACCGTCAACAAGGTGAGCAAGGTCAAGCGGGTTTTGAACAGCCACGTTTTAACAATAACCAAACGGGTT
ATGCAGCTAACAATACTCAGCAAACGGGTTATGCTAATCAAGGCAATTTTAATCAAAACCAAGCTGGTGGCGGTTATGCC
AATAATAATGCCAATAGCTTTGCTGCAAAACCTCAAGCAGCACCATCGCCTGCACCAGTAGATTTAGATGATGATTTACC
GTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.759

100

0.548
  ssb Vibrio cholerae strain A1552

44.388

100

0.463
  ssb Neisseria meningitidis MC58

39.247

98.936

0.388
  ssb Neisseria gonorrhoeae MS11

38.71

98.936

0.383