Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QSG83_RS15015 Genome accession   NZ_CP127892
Coordinates   2898734..2899309 (-) Length   191 a.a.
NCBI ID   WP_096902231.1    Uniprot ID   -
Organism   Acinetobacter towneri strain SAAt401     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2893734..2904309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSG83_RS14995 (QSG83_15005) - 2893966..2894796 (-) 831 WP_178319019.1 cyclopropane-fatty-acyl-phospholipid synthase family protein -
  QSG83_RS15000 (QSG83_15010) - 2895108..2896415 (-) 1308 WP_178319020.1 FAD-dependent oxidoreductase -
  QSG83_RS15005 (QSG83_15015) - 2896839..2897723 (-) 885 WP_178319021.1 pirin family protein -
  QSG83_RS15010 (QSG83_15020) ahpC 2897920..2898483 (-) 564 WP_004970191.1 alkyl hydroperoxide reductase subunit C -
  QSG83_RS15015 (QSG83_15025) ssb 2898734..2899309 (-) 576 WP_096902231.1 single-stranded DNA-binding protein Machinery gene
  QSG83_RS15020 (QSG83_15030) - 2899361..2900725 (-) 1365 WP_104852874.1 MFS transporter -
  QSG83_RS15025 (QSG83_15035) - 2900941..2902026 (-) 1086 WP_004970195.1 DUF475 domain-containing protein -
  QSG83_RS15030 (QSG83_15040) tenA 2902331..2903005 (+) 675 WP_317028086.1 thiaminase II -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21036.83 Da        Isoelectric Point: 6.4800

>NTDB_id=845115 QSG83_RS15015 WP_096902231.1 2898734..2899309(-) (ssb) [Acinetobacter towneri strain SAAt401]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSDVWTDKNTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDSANRGQSDQQDGGFAQPRFNNNQGGYGNQNQAPATGYANQNQGGFNQNQGG
GYANNNPSGFAPKPQAAPATAPADLDDDLPF

Nucleotide


Download         Length: 576 bp        

>NTDB_id=845115 QSG83_RS15015 WP_096902231.1 2898734..2899309(-) (ssb) [Acinetobacter towneri strain SAAt401]
ATGCGTGGTGTAAATAAAGTCATTTTAGTGGGTACTTTAGGTCGTGATCCTGAAACAAAAACTTTCCCAAACGGGGGTTC
TCTCACTCAATTTTCTATCGCAACCAGTGATGTCTGGACAGACAAAAACACAGGTGAGCGTAAAGAGCAAACAGAGTGGC
ATCGCATTGTTTTACATAACCGTTTAGGCGAGATTGCACAGCAATATTTACGCAAAGGTTCTAAAGTATATATTGAAGGT
TCATTGCGTACGCGTCAGTGGACAGACCAAAATGGTCAAGAGCGTTACACCACTGAAATTCGTGGCGATCAAATGCAAAT
GCTCGACTCTGCTAACCGTGGACAATCTGACCAGCAAGATGGTGGCTTTGCTCAACCACGTTTTAACAATAACCAAGGCG
GTTATGGCAATCAGAACCAAGCTCCAGCCACAGGTTATGCGAATCAAAATCAAGGCGGTTTTAACCAAAATCAGGGTGGT
GGCTATGCCAACAATAACCCAAGTGGTTTTGCACCGAAGCCACAAGCTGCGCCTGCAACCGCACCTGCAGATTTAGATGA
TGATTTGCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

53.769

100

0.56
  ssb Vibrio cholerae strain A1552

46.429

100

0.476
  ssb Neisseria gonorrhoeae MS11

40.314

100

0.403
  ssb Neisseria meningitidis MC58

38.542

100

0.387