Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   V2197_RS08940 Genome accession   NZ_CP143901
Coordinates   1906592..1907089 (-) Length   165 a.a.
NCBI ID   WP_003114685.1    Uniprot ID   A0A0H2ZGD4
Organism   Pseudomonas aeruginosa strain PA12_L1_25.22_ST207     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1901592..1912089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V2197_RS08920 (V2197_08920) pchD 1902367..1904010 (+) 1644 WP_016852424.1 pyochelin biosynthesis salicyl-AMP ligase PchD -
  V2197_RS08925 (V2197_08925) pchC 1904007..1904762 (+) 756 WP_033996262.1 pyochelin biosynthesis editing thioesterase PchC -
  V2197_RS08930 (V2197_08930) pchB 1904762..1905067 (+) 306 WP_003106950.1 isochorismate lyase PchB -
  V2197_RS08935 (V2197_08935) pchA 1905064..1906503 (+) 1440 WP_218816343.1 isochorismate synthase -
  V2197_RS08940 (V2197_08940) ssb 1906592..1907089 (-) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  V2197_RS08945 (V2197_08945) - 1907106..1908494 (-) 1389 WP_003103910.1 MFS transporter -
  V2197_RS08950 (V2197_08950) uvrA 1908708..1911545 (+) 2838 WP_003093663.1 excinuclease ABC subunit UvrA Machinery gene
  V2197_RS08955 (V2197_08955) bfr 1911617..1912081 (-) 465 WP_003093668.1 bacterioferritin -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18557.46 Da        Isoelectric Point: 5.2781

>NTDB_id=845054 V2197_RS08940 WP_003114685.1 1906592..1907089(-) (ssb) [Pseudomonas aeruginosa strain PA12_L1_25.22_ST207]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=845054 V2197_RS08940 WP_003114685.1 1906592..1907089(-) (ssb) [Pseudomonas aeruginosa strain PA12_L1_25.22_ST207]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGATGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGATTCGCAGCGCGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAACAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAACCGGCCCAGGACTACGACAGCTTCGAC
GACGACATTCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.576
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.521
  ssb Neisseria meningitidis MC58

47.486

100

0.515