Detailed information NTG0084475

Bioinformatically predicted

Overview

• Name: comEC/celB
• Type: Machinery gene
• Locus tag: L6410_RS03400
• Genome accession: NZ_AP024276
• Coordinates: 675778..678015 (+)
• Length: 745 a.a.
• NCBI ID: WP_237396052.1
• Uniprot ID: -
• Organism: Streptococcus parasuis strain SUT-286
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 670778..683015

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
L6410_RS03370 (SUT286_06310)	-	672047..672454 (+)	408	WP_172040856.1	GNAT family N-acetyltransferase	-
L6410_RS03375 (SUT286_06320)	-	672575..673186 (+)	612	WP_172040854.1	FMN-dependent NADH-azoreductase	-
L6410_RS03380 (SUT286_06330)	-	673204..673476 (-)	273	WP_024397279.1	GIY-YIG nuclease family protein	-
L6410_RS03385 (SUT286_06340)	-	673466..674215 (-)	750	WP_024397280.1	tRNA1(Val) (adenine(37)-N6)-methyltransferase	-
L6410_RS03390 (SUT286_06350)	-	674308..675051 (+)	744	WP_024404506.1	lysophospholipid acyltransferase family protein	-
L6410_RS03395 (SUT286_06360)	-	675117..675794 (+)	678	WP_237396050.1	helix-hairpin-helix domain-containing protein	-
L6410_RS03400 (SUT286_06370)	comEC/celB	675778..678015 (+)	2238	WP_237396052.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
L6410_RS03405 (SUT286_06380)	holA	678079..679110 (+)	1032	WP_237396063.1	DNA polymerase III subunit delta	-
L6410_RS03410 (SUT286_06390)	sodA	679187..679792 (+)	606	WP_024391732.1	superoxide dismutase SodA	-
L6410_RS03415 (SUT286_06400)	rplS	679994..680341 (+)	348	WP_172103451.1	50S ribosomal protein L19	-
L6410_RS03420 (SUT286_06410)	-	680614..682353 (+)	1740	WP_237396072.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 745 a.a.
• Molecular weight: 84217.22 Da
• Isoelectric Point: 6.7493

>NTDB_id=84475 L6410_RS03400 WP_237396052.1 675778..678015(+) (comEC/celB) [Streptococcus parasuis strain SUT-286]
MSRLIRLPCQPIHFAVLAVLTYFAVHSFSLLTMSLLSLLLAVFGFRQGKVVFIKTLPLLALCGLFFGCQKIQWEWTNQWA
PEQVTTVQVIPDTIDVNGDSLSFRGRAEGQVFQVFYKLASQEEQTYFQELTDLVQLEVDAEVSQPAGQRNFNGFDYQAYL
KTQGIYRTVKISTINNILPIHSWNIFDWLSSWRRQALVYIKSHFPAPMSHYMTGLLLGELDSDFDQMSDLYSSLGIIHLF
ALSGMQVGFFIDKFRWLLLRLGLTKETVDKLQIPFSLVYAGLTGFSVSVVRSLVQKILGNLGLRKLDNFAATVFVCLLFM
PRFLLTAGGVLTFTYALLLTVFDFEELGQLKKIAVESLSISLGILPVLMSYFFAFQPLSILLTFVFSFVFDVLLLPGLSV
ILLLSPFIKITWVNGFFILMEKIIVWVAELGIRPWILGKPTGLVFLLLLGCLFLLYDFHREKKWLLGLSLVLALLFFITK
HPLENEVTVVDVGQGDSIFLRDMRGRTVLIDVGGRVDFVAKEAWRERSREANAERTLIPYLHSRGVDRIDDLVLTHTDAD
HVGDVLEVAKQIQIGKIYVSPGSLTVPDFVATLRKINVPVHVVNPGDRLPIFDSYLEVLYPNGIGDGGNNDSIVLYGRLL
KTNFLFTGDLEQGELDLITSYPQLPVDVLKAGHHGSKGSSYPEFLAHIGAKIALISAGENNRYQHPHQETLERFDSQNMQ
VYRTDLQGAIRFRGWKQWSIETVKE

Nucleotide

• Length: 2238 bp

>NTDB_id=84475 L6410_RS03400 WP_237396052.1 675778..678015(+) (comEC/celB) [Streptococcus parasuis strain SUT-286]
ATGTCACGGTTGATTAGACTCCCTTGTCAGCCCATTCACTTTGCAGTATTGGCGGTGTTAACCTACTTTGCAGTCCACTC
TTTTTCACTTTTGACAATGAGCCTGCTGAGTCTGTTACTAGCAGTCTTTGGGTTTCGGCAAGGAAAGGTGGTCTTCATCA
AAACGCTACCGCTTCTAGCCTTATGTGGTCTCTTCTTCGGATGTCAGAAGATACAATGGGAGTGGACAAATCAATGGGCT
CCAGAGCAAGTGACAACTGTGCAGGTTATTCCTGATACCATTGATGTCAACGGAGACAGTCTATCTTTTCGTGGTCGGGC
TGAAGGTCAAGTTTTTCAGGTTTTCTATAAACTTGCAAGTCAGGAAGAACAAACCTACTTTCAGGAGCTTACGGACTTGG
TGCAGTTAGAGGTAGATGCAGAAGTTAGCCAACCAGCAGGTCAACGTAATTTCAATGGTTTTGATTATCAGGCTTATCTC
AAAACCCAGGGCATCTATCGGACAGTAAAAATAAGTACTATTAACAATATTCTCCCTATTCATTCCTGGAATATCTTTGA
CTGGTTGTCAAGCTGGCGGAGGCAGGCTCTCGTTTATATCAAATCTCATTTTCCTGCTCCCATGAGCCACTACATGACTG
GATTACTATTGGGAGAGTTAGATAGTGACTTTGACCAAATGAGTGACCTCTATTCTAGTCTAGGGATCATTCATCTTTTT
GCCCTGTCTGGGATGCAGGTTGGTTTTTTCATTGACAAATTTCGCTGGCTTTTATTGCGTTTGGGTTTAACCAAGGAAAC
TGTCGATAAGCTTCAAATTCCGTTTTCTCTTGTTTATGCAGGATTGACAGGATTTTCAGTCTCAGTCGTGCGGTCCTTAG
TCCAGAAAATTCTGGGTAATCTTGGGCTACGAAAATTGGATAATTTTGCAGCAACTGTCTTTGTTTGTCTCTTGTTTATG
CCACGTTTTCTTCTGACAGCAGGAGGTGTGCTGACATTTACCTATGCTTTGTTATTGACAGTCTTTGATTTTGAAGAGCT
AGGGCAGCTAAAGAAGATAGCAGTGGAGAGTCTGAGTATTTCTCTTGGAATTTTACCGGTCTTGATGTCCTATTTTTTTG
CCTTTCAGCCCTTATCTATCCTTTTAACGTTTGTTTTTTCCTTCGTTTTTGATGTGTTGTTGTTACCTGGGCTATCTGTT
ATTCTTTTACTATCGCCCTTCATTAAAATTACGTGGGTCAACGGATTCTTTATCCTTATGGAAAAGATTATTGTTTGGGT
GGCAGAATTGGGGATTCGACCTTGGATTTTAGGAAAACCTACGGGCCTTGTCTTTTTGCTCTTGCTGGGCTGCCTTTTCT
TGCTTTATGATTTTCACAGAGAGAAGAAATGGCTCCTTGGATTGAGTCTGGTCCTTGCTCTGCTATTTTTCATAACCAAG
CACCCACTGGAAAATGAGGTAACGGTGGTAGACGTAGGGCAGGGGGATAGTATCTTTTTGCGGGACATGCGGGGGCGGAC
GGTTCTGATTGATGTAGGTGGTCGGGTTGACTTTGTTGCAAAGGAAGCTTGGCGGGAGCGGTCTAGGGAAGCAAATGCGG
AGCGAACTCTGATTCCTTACCTGCATAGTCGAGGTGTTGATCGGATTGATGATTTGGTTCTGACCCATACCGATGCAGAT
CATGTGGGTGATGTGCTAGAAGTGGCTAAGCAGATTCAAATAGGTAAGATTTACGTTTCTCCAGGTAGTTTGACTGTACC
AGATTTTGTTGCGACTTTGAGGAAAATAAATGTCCCTGTTCATGTTGTAAATCCTGGAGATCGATTGCCCATTTTTGATT
CCTATCTAGAAGTTCTATATCCCAATGGAATTGGAGATGGAGGCAATAATGACTCAATTGTACTCTATGGTCGTTTGTTA
AAAACGAATTTCCTCTTTACCGGTGACTTGGAGCAAGGGGAATTAGATTTAATCACTTCTTATCCGCAGCTACCAGTCGA
TGTGCTGAAAGCAGGTCACCATGGCTCCAAGGGCTCTTCATATCCAGAATTTTTAGCCCATATTGGAGCAAAAATTGCTC
TGATTTCTGCCGGTGAAAATAATCGCTATCAACATCCACATCAGGAAACTCTGGAACGTTTCGACAGCCAAAATATGCAG
GTTTACCGAACGGATCTGCAAGGAGCAATCCGTTTCCGAGGTTGGAAACAGTGGAGTATTGAAACGGTAAAAGAGTGA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (215-458)

• Domain of unknown function (DUF4131) (DUF4131) (30-176)

• Metallo-beta-lactamase superfamily (Lactamase_B) (491-698)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comEC/celB	Streptococcus mitis SK321	53.815	100	0.54
comEC/celB	Streptococcus mitis NCTC 12261	53.504	99.597	0.533
comEC/celB	Streptococcus pneumoniae TIGR4	52.759	99.732	0.526
comEC/celB	Streptococcus pneumoniae Rx1	52.221	99.732	0.521
comEC/celB	Streptococcus pneumoniae D39	52.221	99.732	0.521
comEC/celB	Streptococcus pneumoniae R6	52.221	99.732	0.521
comEC	Lactococcus lactis subsp. cremoris KW2	47.263	100	0.475