Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   L6410_RS02895 Genome accession   NZ_AP024276
Coordinates   572472..573116 (-) Length   214 a.a.
NCBI ID   WP_237395903.1    Uniprot ID   -
Organism   Streptococcus parasuis strain SUT-286     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 567472..578116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6410_RS02875 (SUT286_05320) - 567726..568250 (+) 525 WP_237395895.1 VanZ family protein -
  L6410_RS02880 - 568435..570005 (+) 1571 WP_237395897.1 IS3 family transposase -
  L6410_RS02885 (SUT286_05350) nadE 570070..570894 (-) 825 WP_237395899.1 ammonia-dependent NAD(+) synthetase -
  L6410_RS02890 (SUT286_05360) - 570907..572367 (-) 1461 WP_237395901.1 nicotinate phosphoribosyltransferase -
  L6410_RS02895 cclA/cilC 572472..573116 (-) 645 WP_237395903.1 prepilin peptidase Machinery gene
  L6410_RS02900 (SUT286_05370) - 573157..573975 (-) 819 WP_237395905.1 cation diffusion facilitator family transporter -
  L6410_RS02905 (SUT286_05380) - 574097..574615 (+) 519 WP_237395915.1 TetR/AcrR family transcriptional regulator -
  L6410_RS02910 (SUT286_05390) - 574625..575173 (+) 549 WP_237395917.1 tRNA (mnm(5)s(2)U34)-methyltransferase -
  L6410_RS02915 (SUT286_05400) - 575231..577207 (+) 1977 WP_419580013.1 cation:proton antiporter -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24353.41 Da        Isoelectric Point: 8.1597

>NTDB_id=84468 L6410_RS02895 WP_237395903.1 572472..573116(-) (cclA/cilC) [Streptococcus parasuis strain SUT-286]
MKICILFFLGASIGSFLGLVIDRFPEQSIIRPSSHCSSCKKRLKVWDLIPILSQLSTASRCRYCKVNIPYWYAGLEFLTG
LAVLLCHFQLLSLTETILILAGLVLTIYDIKHQEYPFAVWLVFTFIALILSQLNWLFCCFLALAFLTEKWQFNIGSGDFL
YLASLSLICGLTEILWIIQISSLLGLLVFTIYKPRSIPYIPFLFLASIFAILCI

Nucleotide


Download         Length: 645 bp        

>NTDB_id=84468 L6410_RS02895 WP_237395903.1 572472..573116(-) (cclA/cilC) [Streptococcus parasuis strain SUT-286]
ATGAAGATCTGTATCCTATTTTTCCTCGGAGCTTCAATTGGCTCCTTTTTGGGACTGGTCATTGACCGGTTCCCTGAACA
ATCCATTATCCGACCATCTAGTCATTGTAGTTCTTGTAAGAAGCGACTCAAGGTTTGGGACCTGATTCCCATTCTTTCTC
AGCTTTCAACCGCATCCAGATGTCGTTATTGTAAGGTAAATATTCCCTATTGGTATGCTGGACTAGAATTCTTAACTGGA
CTAGCTGTCCTGCTCTGCCATTTTCAACTCCTAAGCCTAACTGAAACCATCCTCATCCTTGCAGGGCTGGTTTTGACCAT
TTACGACATCAAGCATCAGGAATATCCTTTTGCCGTCTGGCTCGTTTTTACTTTTATAGCTCTGATACTATCCCAGCTAA
ACTGGCTCTTTTGTTGCTTTTTAGCCTTGGCTTTTCTGACAGAGAAATGGCAGTTCAATATCGGTTCGGGTGATTTTCTA
TATTTGGCTAGTCTGTCCCTAATTTGTGGCTTGACTGAAATCCTATGGATTATTCAAATCAGCTCACTTTTAGGCTTACT
CGTCTTTACAATATACAAGCCAAGATCCATCCCTTACATACCATTCCTTTTTCTTGCGAGTATTTTCGCCATTCTGTGCA
TCTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

50.99

94.393

0.481
  cclA/cilC Streptococcus pneumoniae Rx1

50.495

94.393

0.477
  cclA/cilC Streptococcus pneumoniae D39

50.495

94.393

0.477
  cclA/cilC Streptococcus pneumoniae R6

50.495

94.393

0.477
  cclA/cilC Streptococcus pneumoniae TIGR4

49.505

94.393

0.467
  cclA/cilC Streptococcus mitis NCTC 12261

48.515

94.393

0.458

Multiple sequence alignment