Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   QLQ02_RS16060 Genome accession   NZ_CP127833
Coordinates   3107712..3108782 (+) Length   356 a.a.
NCBI ID   WP_168748237.1    Uniprot ID   A0AAP3CRF1
Organism   Bacillus mojavensis strain KRS009     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3102712..3113782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLQ02_RS16030 mgsR 3103000..3103380 (+) 381 WP_026014741.1 transcriptional regulator MgsR -
  QLQ02_RS16040 - 3103613..3104452 (+) 840 WP_268451132.1 STAS domain-containing protein -
  QLQ02_RS16045 - 3104532..3105861 (-) 1330 Protein_3100 hemolysin family protein -
  QLQ02_RS16050 - 3106005..3106955 (+) 951 WP_010334929.1 magnesium transporter CorA family protein -
  QLQ02_RS16055 - 3107190..3107360 (+) 171 WP_286058317.1 CBS domain-containing protein -
  QLQ02_RS16060 comGA 3107712..3108782 (+) 1071 WP_168748237.1 competence protein ComGA Machinery gene
  QLQ02_RS16065 comGB 3108769..3109806 (+) 1038 WP_286058318.1 competence type IV pilus assembly protein ComGB Machinery gene
  QLQ02_RS16070 comGC 3109820..3110116 (+) 297 WP_010334925.1 competence type IV pilus major pilin ComGC Machinery gene
  QLQ02_RS16075 comGD 3110106..3110540 (+) 435 WP_286059883.1 competence type IV pilus minor pilin ComGD Machinery gene
  QLQ02_RS16080 comGE 3110524..3110871 (+) 348 WP_286058319.1 competence type IV pilus minor pilin ComGE Machinery gene
  QLQ02_RS16085 comGF 3110873..3111280 (+) 408 WP_286058320.1 competence type IV pilus minor pilin ComGF Machinery gene
  QLQ02_RS16090 comGG 3111281..3111655 (+) 375 WP_286058321.1 competence type IV pilus minor pilin ComGG Machinery gene
  QLQ02_RS16095 - 3111727..3111906 (+) 180 WP_003236949.1 YqzE family protein -
  QLQ02_RS16100 - 3111949..3112272 (-) 324 WP_168748230.1 YqzG/YhdC family protein -
  QLQ02_RS16105 tapA 3112549..3113310 (+) 762 WP_268451136.1 amyloid fiber anchoring/assembly protein TapA -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40445.55 Da        Isoelectric Point: 8.6434

>NTDB_id=844466 QLQ02_RS16060 WP_168748237.1 3107712..3108782(+) (comGA) [Bacillus mojavensis strain KRS009]
MDSIENISRTLIEEAYKTKASDIHIVPRERDAIIHFRVDNALLKKRNMKKEECVRLISHFKFLSAMDIGERRKPQSGSLT
LKLKEGDVHLRMSTLPTINEESLVIRVMPQYNIPSIDKLSLFPQTGATLLSFLKHSHGMLIFTGPTGSGKTTTLYSLIQY
AKKHFNRNIVTLEDPVETRDEDVLQVQVNEKAGVTYSTGLKAILRHDPDMIILGEIRDAETAQIAVRAAMTGHLVLTSLH
TRDAKGAIYRLLEFGINMNEIEQTVIAIAAQRLVDLACPYCENGCSSVYCRLSRNIRRASVYELLYGKNLQQCIQEAKGD
NANYQYQTLRQIIRKGIALGYLTTNNYDRWVYHETD

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=844466 QLQ02_RS16060 WP_168748237.1 3107712..3108782(+) (comGA) [Bacillus mojavensis strain KRS009]
TTGGATTCGATAGAAAACATAAGTAGAACCTTAATTGAAGAGGCATATAAGACGAAGGCCTCTGACATTCACATTGTGCC
AAGGGAACGGGACGCGATCATCCATTTTCGGGTTGACAATGCATTGCTGAAAAAGCGAAACATGAAAAAAGAAGAGTGTG
TAAGGCTCATTTCTCATTTTAAGTTTCTCTCAGCTATGGACATTGGGGAGAGAAGAAAGCCGCAAAGTGGATCGCTTACT
CTAAAATTAAAAGAGGGTGACGTTCACTTAAGGATGTCAACGCTCCCGACAATTAACGAAGAAAGCCTCGTCATCAGAGT
GATGCCTCAGTATAATATCCCTTCGATTGACAAACTGTCTTTATTCCCACAGACAGGAGCCACCTTGCTTTCATTTTTAA
AACACTCCCACGGCATGCTGATTTTTACCGGACCAACAGGCTCTGGGAAAACAACAACGTTATATTCTCTGATTCAATAT
GCAAAAAAACATTTTAATCGAAACATTGTCACACTTGAAGATCCAGTGGAAACGAGGGATGAAGATGTTCTTCAGGTGCA
GGTGAATGAAAAAGCCGGTGTCACATACTCCACAGGGCTGAAGGCTATTTTGCGCCATGACCCCGATATGATCATCTTAG
GTGAGATTAGAGATGCTGAAACAGCCCAAATCGCGGTGCGGGCAGCGATGACTGGTCATTTAGTGCTGACGAGCCTTCAT
ACGAGAGATGCCAAGGGCGCGATTTACAGGCTGCTTGAATTTGGCATTAATATGAATGAAATCGAGCAAACGGTTATTGC
GATAGCGGCTCAGCGTTTAGTTGATTTGGCTTGCCCGTATTGTGAAAACGGATGTTCTTCAGTGTATTGTCGACTGTCAC
GAAACATAAGGAGAGCAAGCGTATACGAGCTGCTATACGGGAAAAACCTTCAGCAGTGTATTCAGGAAGCAAAAGGGGAC
AATGCAAATTACCAATATCAAACGCTGCGTCAAATTATAAGAAAAGGGATTGCGCTCGGCTATTTAACGACAAATAACTA
TGACCGGTGGGTTTATCATGAAACAGATTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

94.663

100

0.947
  pilB Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

37.283

97.191

0.362