Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   VZH09_RS02535 Genome accession   NZ_CP143859
Coordinates   535155..537608 (-) Length   817 a.a.
NCBI ID   WP_338462361.1    Uniprot ID   -
Organism   Synechococcus elongatus IITB7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 530155..542608
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VZH09_RS02510 (VZH09_02510) - 530654..531229 (-) 576 WP_208677667.1 hypothetical protein -
  VZH09_RS02515 (VZH09_02515) - 531332..531670 (+) 339 WP_208676988.1 DUF565 domain-containing protein -
  VZH09_RS02520 (VZH09_02520) - 531675..532703 (+) 1029 WP_338462360.1 hypothetical protein -
  VZH09_RS02525 (VZH09_02525) rpmF 532717..532893 (-) 177 WP_208672867.1 50S ribosomal protein L32 -
  VZH09_RS02530 (VZH09_02530) ftsH 533082..534980 (+) 1899 WP_338462995.1 ATP-dependent zinc metalloprotease FtsH -
  VZH09_RS02535 (VZH09_02535) recG 535155..537608 (-) 2454 WP_338462361.1 ATP-dependent DNA helicase RecG Machinery gene
  VZH09_RS02540 (VZH09_02540) - 537618..538562 (-) 945 WP_338462363.1 hypothetical protein -
  VZH09_RS02545 (VZH09_02545) - 538677..538988 (-) 312 WP_208672864.1 DUF3067 family protein -
  VZH09_RS02550 (VZH09_02550) - 539160..540404 (-) 1245 WP_338462365.1 hypothetical protein -
  VZH09_RS02555 (VZH09_02555) purD 540559..541860 (+) 1302 WP_338462366.1 phosphoribosylamine--glycine ligase -

Sequence

Protein


Download         Length: 817 a.a.        Molecular weight: 91092.18 Da        Isoelectric Point: 8.7672

>NTDB_id=844467 VZH09_RS02535 WP_338462361.1 535155..537608(-) (recG) [Synechococcus elongatus IITB7]
MTAASSAPDWRRLQQALAIEAEQGFGDLVGRQSRFSEFLSQALQEAAAAIADERWQQLAQAYQRYGELSASQRQHLVANT
RRQIHEQQRRSQARVSENSPPARRLPRSQSPVATTTAQTALDQALTYLKGVGPRVAAQLERLELRTVRDLLHHYPRNYVD
YARQVNIRALEPGETATLIGAVQRCTCFTSPRNAKLTILELVVRDGSGQIRLSRFFMGTRYSGRGWQEQQRRLYPPGTMI
AASGLVKRSKYGVTLDNPEIEVLDSPDSPIASLKVGRIVPIYPLTEGVAADTLRRAIVQALPAAEQLRDPLPTALREQHQ
LLVLNQAIAAIHFPETPELLQQARRRLVFDEFLYLQLGLLQRRARQRAESAAAVLAPTGELIDRFYQLLPFQLTGAQQRV
VNDILTDLQQPWPMNRLVQGDVGSGKTVVAIVSLLAAIQAGCQGALMAPTEVLAEQHYRKLVDWCTQLHLPVELLTGSTR
AAKRREIQRSLATGELPLLVGTHALIQDPVDFQNLGLVVIDEQHRFGVAQRAKLQQKGVNPHVLTMTATPIPRTLALTLH
GDLEVSQIDELPPGRQPIQTTALGPSDRQHSHDLMRREIAQGRQVYVVLPLVEESEKLDLRSAIEEYQRLSQVFPEFQIG
LLHGRMSSAEKDAAIAAFRDRQTDILVSTTVVEVGVDVPNATVMLIEHAERFGLSQLHQLRGRVGRGAARSYCLLMSASR
SETAQQRLKVMEQSQDGFFIAEMDLRLRGPGQVLGTRQSGLPDFALASLVEDQDVLDLARTTAEQLIEQDPELTRSPLLK
QELEARYRRLMGGMILT

Nucleotide


Download         Length: 2454 bp        

>NTDB_id=844467 VZH09_RS02535 WP_338462361.1 535155..537608(-) (recG) [Synechococcus elongatus IITB7]
ATGACAGCGGCTAGCTCAGCTCCTGATTGGCGTCGCCTCCAACAAGCCTTGGCGATCGAGGCGGAGCAGGGCTTTGGCGA
TCTGGTGGGGCGGCAGTCCCGCTTCAGTGAATTTCTCAGTCAGGCGTTGCAGGAAGCGGCGGCGGCGATCGCCGATGAAC
GCTGGCAGCAGTTGGCCCAGGCCTATCAGCGCTACGGCGAACTGAGCGCCAGCCAACGCCAGCACCTCGTGGCTAACACG
CGGCGTCAAATTCATGAACAACAGCGGCGCAGCCAAGCCCGCGTCAGTGAAAACTCTCCCCCAGCCCGGCGCTTACCGCG
TAGTCAATCGCCCGTAGCGACCACTACGGCTCAGACAGCATTAGACCAAGCGCTGACTTATCTCAAGGGGGTTGGGCCTC
GGGTTGCTGCGCAACTAGAACGGCTGGAGTTGCGCACCGTTCGCGATCTGCTGCATCACTACCCGCGCAACTATGTCGAT
TACGCTCGCCAAGTCAACATTCGCGCCCTTGAGCCCGGTGAAACTGCGACCCTGATCGGTGCGGTTCAACGCTGCACCTG
CTTCACTAGCCCGCGCAATGCCAAGCTAACAATTTTGGAGCTGGTAGTGCGCGATGGCAGCGGTCAAATCCGGCTCAGCC
GCTTCTTTATGGGGACGCGCTATAGCGGTCGCGGCTGGCAGGAACAACAGCGACGCCTTTACCCACCGGGCACGATGATC
GCTGCCTCAGGCTTGGTCAAACGCAGTAAGTACGGCGTCACCCTCGATAACCCAGAAATTGAGGTTCTCGATAGCCCCGA
CAGTCCGATCGCCTCACTCAAAGTCGGTCGGATTGTTCCGATCTACCCACTGACCGAAGGTGTGGCCGCTGATACACTCC
GCCGAGCGATTGTCCAAGCTCTACCAGCGGCGGAGCAACTGCGCGATCCGTTGCCCACAGCGCTGCGCGAACAACATCAG
CTCCTGGTACTCAATCAAGCGATCGCCGCGATTCACTTCCCTGAGACCCCAGAACTCCTGCAACAGGCACGCCGCCGACT
GGTCTTCGACGAGTTTCTCTACCTTCAGCTGGGTCTGTTGCAACGACGAGCCCGGCAACGAGCAGAGTCAGCAGCAGCGG
TTTTAGCGCCAACCGGTGAGTTGATCGATCGTTTTTATCAATTGCTGCCCTTCCAACTAACAGGTGCCCAGCAGCGGGTG
GTCAACGACATCCTGACCGACCTGCAGCAACCTTGGCCGATGAATCGATTGGTGCAAGGCGATGTTGGTTCTGGCAAAAC
GGTGGTCGCGATCGTCAGTCTCTTAGCCGCGATTCAAGCAGGCTGTCAAGGTGCCCTGATGGCTCCAACGGAAGTGTTGG
CCGAGCAGCACTATCGCAAGCTAGTAGACTGGTGCACCCAACTGCATCTGCCTGTGGAGTTACTGACGGGTTCCACGCGC
GCAGCGAAACGACGGGAAATTCAGCGATCGCTGGCGACGGGGGAACTGCCCCTGCTAGTCGGCACCCATGCACTGATTCA
GGATCCAGTTGATTTTCAAAATCTCGGCCTAGTGGTAATTGATGAGCAGCATCGCTTTGGCGTGGCGCAGCGAGCCAAAC
TACAGCAAAAAGGCGTCAATCCCCATGTGCTGACCATGACAGCGACGCCGATTCCGCGGACCTTGGCACTGACCCTGCAT
GGTGATTTAGAAGTCAGTCAAATCGATGAATTACCACCGGGTCGGCAACCGATTCAAACCACGGCCCTAGGCCCTAGCGA
TCGCCAGCACTCCCATGATTTGATGCGACGGGAAATCGCTCAAGGGCGTCAGGTTTATGTTGTTCTGCCGTTGGTTGAGG
AGTCGGAGAAACTCGATCTGCGATCGGCGATCGAAGAATATCAACGGCTGTCCCAAGTCTTTCCAGAATTCCAGATCGGC
TTGCTGCACGGGCGGATGAGTTCTGCCGAAAAAGATGCCGCGATCGCTGCTTTCCGCGATCGCCAGACCGACATCCTCGT
CTCCACGACAGTGGTTGAAGTCGGTGTCGATGTGCCCAACGCCACCGTCATGTTGATTGAGCATGCCGAGCGCTTTGGCC
TCTCCCAGTTGCACCAATTACGGGGACGAGTCGGGCGCGGCGCAGCCCGTTCCTATTGCTTATTGATGAGTGCATCCCGT
AGCGAAACTGCACAACAACGCCTCAAGGTGATGGAGCAATCCCAAGATGGTTTCTTCATTGCTGAAATGGATTTGCGGCT
GCGCGGACCTGGGCAAGTTTTGGGGACTCGTCAGTCTGGTCTGCCTGATTTTGCCCTCGCCAGCCTTGTTGAAGATCAAG
ATGTGCTTGATCTAGCTAGAACCACCGCTGAGCAATTGATTGAACAAGATCCCGAACTAACGCGATCGCCTTTGCTCAAA
CAAGAACTCGAAGCTCGTTATCGACGGCTGATGGGTGGCATGATTTTGACTTAA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(396-551)

Helicase conserved C-terminal domain (Helicase_C)

(598-707)

RecG wedge domain (RecG_wedge)

(126-301)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(735-796)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

44.643

82.252

0.367
  recG Bacillus subtilis subsp. subtilis str. 168

42.816

85.19

0.365