Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   VZG28_RS11665 Genome accession   NZ_CP143853
Coordinates   2317380..2318660 (-) Length   426 a.a.
NCBI ID   WP_338441380.1    Uniprot ID   -
Organism   Synechococcus elongatus IITB4     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2312380..2323660
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VZG28_RS11650 (VZG28_11650) ligA 2313119..2315158 (-) 2040 WP_338441377.1 NAD-dependent DNA ligase LigA -
  VZG28_RS11655 (VZG28_11655) hoxE 2315282..2315779 (+) 498 WP_338441378.1 bidirectional hydrogenase complex protein HoxE -
  VZG28_RS11660 (VZG28_11660) - 2315779..2317383 (+) 1605 WP_338441379.1 NuoF family protein -
  VZG28_RS11665 (VZG28_11665) cinA 2317380..2318660 (-) 1281 WP_338441380.1 competence/damage-inducible protein A Machinery gene
  VZG28_RS11670 (VZG28_11670) - 2318664..2319743 (-) 1080 WP_208678282.1 MraY family glycosyltransferase -
  VZG28_RS11675 (VZG28_11675) glyA 2319765..2321048 (-) 1284 WP_208674676.1 serine hydroxymethyltransferase -
  VZG28_RS11680 (VZG28_11680) dusB 2321236..2322246 (-) 1011 WP_338441381.1 tRNA dihydrouridine synthase DusB -
  VZG28_RS11685 (VZG28_11685) - 2322324..2322632 (+) 309 WP_011243540.1 carbon dioxide-concentrating mechanism protein CcmK -
  VZG28_RS11690 (VZG28_11690) - 2322677..2323018 (+) 342 WP_011243539.1 carbon dioxide-concentrating mechanism protein CcmK -
  VZG28_RS11695 (VZG28_11695) - 2323130..2323501 (+) 372 WP_208674679.1 DUF1823 family protein -

Sequence

Protein


Download         Length: 426 a.a.        Molecular weight: 45545.66 Da        Isoelectric Point: 4.7252

>NTDB_id=844449 VZG28_RS11665 WP_338441380.1 2317380..2318660(-) (cinA) [Synechococcus elongatus IITB4]
MSDPRYCAEIISVGTELLLGNILNSNAQFLAEELAQLGIPHYFQTVVGDNRDRLQAAVKIAAERSGLLIFTGGLGPTPDD
LTTETLAACFDTPLAERPEVIADIEAKFARRGRVLTDNNRKQALLPVGAELLPNPSGTAPGMIWSPRSGLTLMTFPGVPA
EMRRMWAETAVPWLHQNGWCRSILVSRLLRFWGISESALAEKVAPFFDLQNPTVAPYANNGEVKLRITAAATSEAEGQAL
IAPIEQELRAIAGRDCYGADSDSLASVVGEILRDRGQTLSVAESCTGGGLGQLITTIPGSSQWFWGGAIAYDNRVKQSLL
NVSAETLAESGAVSAAVAEQMAIGIQQRLGTTWGISITGIAGPDGGTETKPVGLVYIGIAGPSGCFSVERRWGAERGRDW
VRRLSAGDALDQLRRSLLTEDSSRLD

Nucleotide


Download         Length: 1281 bp        

>NTDB_id=844449 VZG28_RS11665 WP_338441380.1 2317380..2318660(-) (cinA) [Synechococcus elongatus IITB4]
ATGTCGGATCCCCGTTACTGCGCCGAGATTATCAGTGTCGGCACAGAGTTGCTGTTGGGCAACATCCTCAACAGCAATGC
TCAGTTTTTAGCCGAAGAGCTCGCGCAACTGGGGATTCCTCACTACTTCCAAACGGTGGTAGGTGACAACCGCGATCGCT
TGCAGGCAGCGGTCAAAATTGCAGCCGAGCGATCGGGGCTGCTGATTTTCACGGGCGGTCTAGGGCCAACCCCAGACGAC
CTAACCACCGAGACTTTAGCTGCTTGTTTCGATACGCCCTTGGCCGAGCGTCCCGAGGTGATCGCTGATATTGAGGCCAA
GTTTGCGCGGCGCGGGCGGGTCTTGACCGATAACAACCGCAAGCAAGCCCTGTTACCTGTGGGGGCAGAACTGCTGCCCA
ATCCCAGCGGCACCGCCCCCGGCATGATTTGGTCGCCGCGATCGGGCCTGACGCTGATGACATTCCCTGGTGTACCGGCA
GAAATGCGCCGGATGTGGGCGGAAACAGCAGTCCCATGGCTCCATCAAAACGGTTGGTGTCGCTCAATCCTTGTCAGTCG
TTTGCTGCGATTTTGGGGCATTTCCGAGTCGGCTCTGGCCGAAAAGGTAGCGCCCTTTTTTGACCTTCAAAATCCAACGG
TCGCTCCTTACGCCAACAACGGCGAAGTGAAGTTACGGATCACGGCGGCAGCCACTTCCGAGGCAGAGGGACAAGCCTTA
ATTGCTCCGATCGAGCAAGAATTGCGGGCGATCGCAGGCAGGGATTGCTACGGTGCCGACAGTGATAGCTTGGCCTCGGT
GGTGGGTGAGATTTTGCGCGATCGCGGTCAGACTTTGTCAGTCGCAGAATCCTGCACAGGCGGTGGCCTCGGTCAGCTAA
TCACAACGATTCCCGGCAGCTCTCAATGGTTTTGGGGCGGGGCGATCGCCTACGACAACCGCGTGAAACAATCGCTCCTC
AACGTCTCGGCAGAAACCTTGGCTGAATCTGGTGCAGTCAGTGCAGCGGTTGCAGAGCAGATGGCGATCGGCATTCAACA
GCGCTTAGGGACGACCTGGGGCATCTCGATTACCGGCATTGCAGGACCAGATGGTGGCACAGAAACCAAGCCTGTCGGAC
TGGTTTATATCGGCATTGCGGGGCCATCGGGCTGCTTTAGCGTAGAGCGGCGTTGGGGTGCGGAGCGTGGGCGGGACTGG
GTGCGGCGACTGAGCGCAGGCGATGCACTCGATCAACTGCGGCGATCGCTGCTCACTGAAGACTCATCCCGGCTCGACTA
G

Domains

Predicted by InterProScan.

Competence-damaged protein (CinA)

(262-416)

Damage-inducible protein CinA KH domain (CinA_KH)

(186-258)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-175)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus pneumoniae TIGR4

40.421

100

0.406
  cinA Streptococcus pneumoniae Rx1

40.662

99.296

0.404
  cinA Streptococcus pneumoniae R6

40.662

99.296

0.404
  cinA Streptococcus pneumoniae R36A

40.662

99.296

0.404
  cinA Streptococcus pneumoniae D39

40.426

99.296

0.401
  cinA Streptococcus mitis NCTC 12261

40.189

99.296

0.399
  cinA Streptococcus mitis SK321

40.189

99.296

0.399
  cinA Bacillus subtilis subsp. subtilis str. 168

44.118

87.793

0.387
  cinA Streptococcus mutans UA159

37.143

98.592

0.366
  cinA Streptococcus suis isolate S10

36.993

98.357

0.364