Detailed information NTG0844376

Bioinformatically predicted

Overview

• Name: pilT
• Type: Machinery gene
• Locus tag: VZF83_RS05095
• Genome accession: NZ_CP143849
• Coordinates: 1056665..1057780 (-)
• Length: 371 a.a.
• NCBI ID: WP_338431444.1
• Uniprot ID: -
• Organism: Synechococcus elongatus IITB3
• Function: type IV pilus retraction (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1051665..1062780

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VZF83_RS05075 (VZF83_05075)	gor	1052383..1053723 (-)	1341	WP_338431439.1	glutathione-disulfide reductase	-
VZF83_RS05080 (VZF83_05080)	-	1053822..1054253 (-)	432	WP_208679033.1	hypothetical protein	-
VZF83_RS05085 (VZF83_05085)	-	1054417..1055127 (-)	711	WP_208672632.1	PHP domain-containing protein	-
VZF83_RS05090 (VZF83_05090)	-	1055806..1056624 (-)	819	WP_338431443.1	D-hexose-6-phosphate mutarotase	-
VZF83_RS05095 (VZF83_05095)	pilT	1056665..1057780 (-)	1116	WP_338431444.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
VZF83_RS05100 (VZF83_05100)	uvrA	1057946..1060957 (-)	3012	WP_338431446.1	excinuclease ABC subunit UvrA	Machinery gene
VZF83_RS05105 (VZF83_05105)	-	1061084..1061245 (+)	162	WP_208672638.1	hypothetical protein	-
VZF83_RS05110 (VZF83_05110)	-	1061319..1061897 (-)	579	WP_338431448.1	GAF domain-containing protein	-
VZF83_RS05115 (VZF83_05115)	-	1062114..1062332 (+)	219	WP_208672641.1	chlorophyll a/b-binding protein	-

Sequence

Protein

• Length: 371 a.a.
• Molecular weight: 41466.77 Da
• Isoelectric Point: 5.4428

>NTDB_id=844376 VZF83_RS05095 WP_338431444.1 1056665..1057780(-) (pilT) [Synechococcus elongatus IITB3]
MTAPTIEQLVRKACQVQASDIHLRVGHPPYFRLREQMYPLPKAPAVTESDMDSWLNEILTPAQRTRLQETQEIDEALFYP
NLIRCRVVCFQTLDGTAITLRLIPLQIPSLFELQLPSVLSGLVQRKQGLILVTGPTGSGKSTTLAAMVNEMNQTMARHII
TIEDPIEYVFDPVRCLITQREIGRHAHDFASALRAALRADPDVILVGEIRDQKTLKTAIYAAQTGHLVLGTLHARNTVST
IDRLIGLDGMVQSSDTRKQFLELLVAVISQQLITPQTGSRRAILEVLINTPAIQDYLNRGELEEAYRLMELDTIEGMQTL
NEALLIEIEQGRLSVEEALKVSIDPGDLDRRLRITGIAQAQGFSSHFQSDF

Nucleotide

• Length: 1116 bp

>NTDB_id=844376 VZF83_RS05095 WP_338431444.1 1056665..1057780(-) (pilT) [Synechococcus elongatus IITB3]
ATGACAGCGCCCACCATTGAGCAACTTGTGCGCAAGGCTTGCCAAGTACAAGCCTCGGATATTCATCTGCGGGTTGGGCA
TCCTCCCTACTTTCGGTTGCGCGAGCAAATGTATCCGCTCCCAAAAGCACCGGCTGTCACAGAGAGTGATATGGATAGCT
GGCTCAATGAAATCTTGACGCCAGCCCAGCGTACTCGTCTTCAAGAAACGCAGGAAATTGATGAAGCGCTTTTTTATCCA
AATCTGATTCGTTGTCGCGTCGTTTGCTTTCAAACACTGGATGGTACAGCGATTACGCTACGGTTAATCCCTCTACAGAT
TCCGAGTCTCTTTGAGCTGCAACTTCCGTCTGTGCTTTCGGGGTTAGTTCAACGGAAACAAGGACTGATTTTAGTCACGG
GACCAACAGGATCAGGTAAGTCAACCACCCTAGCAGCCATGGTTAATGAAATGAACCAAACCATGGCTCGCCATATTATT
ACTATCGAAGACCCTATTGAGTATGTTTTTGATCCTGTTCGCTGTTTGATTACCCAACGTGAAATTGGTCGTCATGCCCA
TGATTTTGCCTCGGCACTGCGGGCTGCGCTACGGGCTGATCCAGATGTCATTCTTGTGGGTGAGATTCGAGATCAAAAGA
CGCTCAAGACAGCTATCTATGCTGCCCAAACGGGTCACCTTGTTTTGGGGACACTCCATGCTCGCAATACAGTCAGCACG
ATCGATCGCTTGATTGGTCTTGATGGCATGGTGCAGAGCTCAGACACGCGCAAGCAGTTCCTAGAGCTATTAGTCGCAGT
AATTTCCCAACAACTGATCACTCCCCAAACTGGTAGTCGTAGGGCAATCTTAGAAGTTTTGATCAATACGCCGGCGATTC
AGGACTATCTCAACCGTGGCGAATTAGAGGAAGCCTATCGCTTGATGGAACTCGACACGATTGAGGGCATGCAAACTCTC
AATGAGGCACTCCTGATCGAGATTGAGCAAGGCCGACTCAGTGTTGAAGAGGCTCTGAAAGTCTCGATTGATCCTGGAGA
TCTCGATCGCCGTCTGCGGATTACTGGGATTGCCCAAGCCCAAGGATTTTCCAGTCATTTTCAATCTGATTTTTAA

Domains

Predicted by InterProScan.

• Type II/IV secretion system protein (T2SSE) (9-273)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilT	Vibrio cholerae O1 biovar El Tor strain E7946	42.771	89.488	0.383
pilT	Vibrio cholerae strain A1552	42.771	89.488	0.383
pilU	Acinetobacter baylyi ADP1	39.884	93.261	0.372
pilT	Acinetobacter baylyi ADP1	40.294	91.644	0.369